Result of FASTA (ccds) for
pF1KA1861
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1861, 957 aa
1>>>pF1KA1861 957 - 957 aa - 957 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7336+/-0.00124; mu= 14.2123+/- 0.074
mean_var=87.1789+/-17.497, 0's: 0 Z-trim(102.6): 24 B-trim: 402 in 1/49
Lambda= 0.137363
statistics sampled from 7004 (7012) to 7004 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.565), E-opt: 0.2 (0.215), width: 16
Scan time: 3.220
The best scores are: opt bits E(32554)
CCDS43617.1 VPS50 gene_id:55610|Hs108|chr7 ( 964) 6215 1242.5 0
CCDS59065.1 VPS50 gene_id:55610|Hs108|chr7 ( 934) 6044 1208.6 0
CCDS5630.1 VPS50 gene_id:55610|Hs108|chr7 ( 327) 1963 399.8 4.6e-111
>>CCDS43617.1 VPS50 gene_id:55610|Hs108|chr7 (964 aa)
initn: 6215 init1: 6215 opt: 6215 Z-score: 6653.5 bits: 1242.5 E(32554): 0
Smith-Waterman score: 6215; 100.0% identity (100.0% similar) in 957 aa overlap (1-957:8-964)
10 20 30 40 50
pF1KA1 MTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA1 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA1 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA1 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA1 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA1 DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA1 SNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIIS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA1 RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSI
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA1 LQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLA
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA1 SNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLN
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA1 KVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSL
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA1 ESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTSG
670 680 690 700 710 720
720 730 740 750 760 770
pF1KA1 DTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPI
730 740 750 760 770 780
780 790 800 810 820 830
pF1KA1 YWIVAGKALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YWIVAGKALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIP
790 800 810 820 830 840
840 850 860 870 880 890
pF1KA1 LPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDK
850 860 870 880 890 900
900 910 920 930 940 950
pF1KA1 EFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDID
910 920 930 940 950 960
pF1KA1 RPKR
::::
CCDS43 RPKR
>>CCDS59065.1 VPS50 gene_id:55610|Hs108|chr7 (934 aa)
initn: 6044 init1: 6044 opt: 6044 Z-score: 6470.6 bits: 1208.6 E(32554): 0
Smith-Waterman score: 6044; 100.0% identity (100.0% similar) in 930 aa overlap (28-957:5-934)
10 20 30 40 50 60
pF1KA1 MTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQVYFSVDSF
:::::::::::::::::::::::::::::::::
CCDS59 MLTLEEFRELREQPSDPQAEQELINSIEQVYFSVDSF
10 20 30
70 80 90 100 110 120
pF1KA1 DIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQT
40 50 60 70 80 90
130 140 150 160 170 180
pF1KA1 GLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KA1 SEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KA1 FDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNTDTKFQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNTDTKFQKL
220 230 240 250 260 270
310 320 330 340 350 360
pF1KA1 QYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEGSNMIGTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEGSNMIGTE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KA1 ETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIISRLMQVGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIISRLMQVGE
340 350 360 370 380 390
430 440 450 460 470 480
pF1KA1 EFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSILQLHEFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSILQLHEFK
400 410 420 430 440 450
490 500 510 520 530 540
pF1KA1 FMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLASNGYESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLASNGYESD
460 470 480 490 500 510
550 560 570 580 590 600
pF1KA1 EQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLNKVNAPIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLNKVNAPIL
520 530 540 550 560 570
610 620 630 640 650 660
pF1KA1 TNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGL
580 590 600 610 620 630
670 680 690 700 710 720
pF1KA1 SSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTSGDTLYGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTSGDTLYGLA
640 650 660 670 680 690
730 740 750 760 770 780
pF1KA1 ERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPIYWIVAGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPIYWIVAGK
700 710 720 730 740 750
790 800 810 820 830 840
pF1KA1 ALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIPLPVSNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIPLPVSNIL
760 770 780 790 800 810
850 860 870 880 890 900
pF1KA1 WEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYI
820 830 840 850 860 870
910 920 930 940 950
pF1KA1 KAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDIDRPKR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDIDRPKR
880 890 900 910 920 930
>>CCDS5630.1 VPS50 gene_id:55610|Hs108|chr7 (327 aa)
initn: 1963 init1: 1963 opt: 1963 Z-score: 2107.4 bits: 399.8 E(32554): 4.6e-111
Smith-Waterman score: 1963; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:8-314)
10 20 30 40 50
pF1KA1 MTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA1 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA1 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA1 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA1 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA1 DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEG
::::::::::::::
CCDS56 DTKFQKLQYKDLCTVCSDLITIHISLL
310 320
957 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 22:09:23 2016 done: Wed Nov 2 22:09:24 2016
Total Scan time: 3.220 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]