FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1868, 665 aa
  1>>>pF1KA1868 665 - 665 aa - 665 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2050+/-0.0011; mu= 10.4476+/- 0.067
 mean_var=99.6380+/-20.049, 0's: 0 Z-trim(105.6): 17  B-trim: 490 in 1/49
 Lambda= 0.128488
 statistics sampled from 8488 (8490) to 8488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.261), width:  16
 Scan time:  3.840

The best scores are:                                      opt bits E(32554)
CCDS2484.1 ARMC9 gene_id:80210|Hs108|chr2          ( 665) 4314 810.6       0
CCDS74666.1 ARMC9 gene_id:80210|Hs108|chr2         ( 818) 4314 810.6       0


>>CCDS2484.1 ARMC9 gene_id:80210|Hs108|chr2               (665 aa)
 initn: 4314 init1: 4314 opt: 4314  Z-score: 4324.9  bits: 810.6 E(32554):    0
Smith-Waterman score: 4314; 99.8% identity (99.8% similar) in 665 aa overlap (1-665:1-665)

               10        20        30        40        50        60
pF1KA1 MGDILAHESELLGLVKEYLDFAEFEDTLKTFSKECKIKGKPLCKTVGGSFRDSKSLTIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MGDILAHESELLGLVKEYLDFAEFEDTLKTFSKECKIKGKPLCKTVGGSFRDSKSLTIQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 DLVAAFDNGDQKVFFDLWEEHISSSIRDGDSFAQKLEFYLHIHFAIYLLKYSVGRPDKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 DLVAAFDNGDQKVFFDLWEEHISSSIRDGDSFAQKLEFYLHIHFAIYLLKYSVGRPDKEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 LDEKISYFKTYLETKGAALSQTTEFLPFYALPFVPNPMVHPSFKELFQDSWTPELKLKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS24 LDEKISYFKTYLETKGAALSQTTEFLPFYALPFVPNPMVHPSFKELFQDSWTPELKLKLI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 KFLALISKASNTPKLLTIYKENGQSNKEILQQLHQQLVEAERRSVTYLKRYNKIQADYHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 KFLALISKASNTPKLLTIYKENGQSNKEILQQLHQQLVEAERRSVTYLKRYNKIQADYHN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 LIGVTAELVDSLEATVSGKMITPEYLQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LIGVTAELVDSLEATVSGKMITPEYLQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 SLAPVKLKDVPLLPSLDYEKLKKDLILGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 SLAPVKLKDVPLLPSLDYEKLKKDLILGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 ISNDLLDCYSHNQRSVLQLLHSTSDVVRQYMARLINAFASLAEGRLYLAQNTKVLQMLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ISNDLLDCYSHNQRSVLQLLHSTSDVVRQYMARLINAFASLAEGRLYLAQNTKVLQMLEG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 RLKEEDKDIITRENVLGALQKFSLRRPLQTAMIQDGLIFWLVDVLKDPDCLSDYTLEYSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 RLKEEDKDIITRENVLGALQKFSLRRPLQTAMIQDGLIFWLVDVLKDPDCLSDYTLEYSV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 ALLMNLCLRSTGKNMCAKVAGLVLKVLSDLLGHENHEIQPYVNGALYSILSVPSIREEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ALLMNLCLRSTGKNMCAKVAGLVLKVLSDLLGHENHEIQPYVNGALYSILSVPSIREEAR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 AMGMEDILRCFIKEGNAEMIRQIEFIIKQLNSEELPDGVLESDDDEDEDDEEDHDIMEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 AMGMEDILRCFIKEGNAEMIRQIEFIIKQLNSEELPDGVLESDDDEDEDDEEDHDIMEAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 LDKDELIQPQLGELSGEKLLTTEYLGIMTNTGKTRRKGLANVQWSGDEPLQRPVTPGGHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LDKDELIQPQLGELSGEKLLTTEYLGIMTNTGKTRRKGLANVQWSGDEPLQRPVTPGGHR
              610       620       630       640       650       660

            
pF1KA1 NGYPV
       :::::
CCDS24 NGYPV
            

>>CCDS74666.1 ARMC9 gene_id:80210|Hs108|chr2              (818 aa)
 initn: 4314 init1: 4314 opt: 4314  Z-score: 4323.4  bits: 810.6 E(32554):    0
Smith-Waterman score: 4314; 99.8% identity (99.8% similar) in 665 aa overlap (1-665:1-665)

               10        20        30        40        50        60
pF1KA1 MGDILAHESELLGLVKEYLDFAEFEDTLKTFSKECKIKGKPLCKTVGGSFRDSKSLTIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MGDILAHESELLGLVKEYLDFAEFEDTLKTFSKECKIKGKPLCKTVGGSFRDSKSLTIQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 DLVAAFDNGDQKVFFDLWEEHISSSIRDGDSFAQKLEFYLHIHFAIYLLKYSVGRPDKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DLVAAFDNGDQKVFFDLWEEHISSSIRDGDSFAQKLEFYLHIHFAIYLLKYSVGRPDKEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 LDEKISYFKTYLETKGAALSQTTEFLPFYALPFVPNPMVHPSFKELFQDSWTPELKLKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS74 LDEKISYFKTYLETKGAALSQTTEFLPFYALPFVPNPMVHPSFKELFQDSWTPELKLKLI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 KFLALISKASNTPKLLTIYKENGQSNKEILQQLHQQLVEAERRSVTYLKRYNKIQADYHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KFLALISKASNTPKLLTIYKENGQSNKEILQQLHQQLVEAERRSVTYLKRYNKIQADYHN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 LIGVTAELVDSLEATVSGKMITPEYLQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LIGVTAELVDSLEATVSGKMITPEYLQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 SLAPVKLKDVPLLPSLDYEKLKKDLILGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SLAPVKLKDVPLLPSLDYEKLKKDLILGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 ISNDLLDCYSHNQRSVLQLLHSTSDVVRQYMARLINAFASLAEGRLYLAQNTKVLQMLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ISNDLLDCYSHNQRSVLQLLHSTSDVVRQYMARLINAFASLAEGRLYLAQNTKVLQMLEG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 RLKEEDKDIITRENVLGALQKFSLRRPLQTAMIQDGLIFWLVDVLKDPDCLSDYTLEYSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RLKEEDKDIITRENVLGALQKFSLRRPLQTAMIQDGLIFWLVDVLKDPDCLSDYTLEYSV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 ALLMNLCLRSTGKNMCAKVAGLVLKVLSDLLGHENHEIQPYVNGALYSILSVPSIREEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ALLMNLCLRSTGKNMCAKVAGLVLKVLSDLLGHENHEIQPYVNGALYSILSVPSIREEAR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 AMGMEDILRCFIKEGNAEMIRQIEFIIKQLNSEELPDGVLESDDDEDEDDEEDHDIMEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AMGMEDILRCFIKEGNAEMIRQIEFIIKQLNSEELPDGVLESDDDEDEDDEEDHDIMEAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 LDKDELIQPQLGELSGEKLLTTEYLGIMTNTGKTRRKGLANVQWSGDEPLQRPVTPGGHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LDKDELIQPQLGELSGEKLLTTEYLGIMTNTGKTRRKGLANVQWSGDEPLQRPVTPGGHR
              610       620       630       640       650       660

                                                                   
pF1KA1 NGYPV                                                       
       :::::                                                       
CCDS74 NGYPVVEDQHTPPQTAQHARNGHPQALPAAHEAVYREGKPSTPESCVSSSSAIIAKPGEW
              670       680       690       700       710       720




665 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:12:27 2016 done: Wed Nov  2 22:12:28 2016
 Total Scan time:  3.840 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]