Result of FASTA (ccds) for
pF1KA1877
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1877, 529 aa
1>>>pF1KA1877 529 - 529 aa - 529 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8829+/-0.000788; mu= 17.0034+/- 0.048
mean_var=97.2148+/-18.974, 0's: 0 Z-trim(111.0): 44 B-trim: 108 in 1/49
Lambda= 0.130079
statistics sampled from 11986 (12030) to 11986 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.37), width: 16
Scan time: 3.250
The best scores are: opt bits E(32554)
CCDS2073.1 ST6GAL2 gene_id:84620|Hs108|chr2 ( 529) 3680 700.9 9.6e-202
CCDS46380.1 ST6GAL2 gene_id:84620|Hs108|chr2 ( 466) 3060 584.5 9.2e-167
CCDS3285.1 ST6GAL1 gene_id:6480|Hs108|chr3 ( 406) 1107 217.9 1.8e-56
CCDS46973.1 ST6GAL1 gene_id:6480|Hs108|chr3 ( 175) 735 147.8 9.6e-36
>>CCDS2073.1 ST6GAL2 gene_id:84620|Hs108|chr2 (529 aa)
initn: 3680 init1: 3680 opt: 3680 Z-score: 3735.4 bits: 700.9 E(32554): 9.6e-202
Smith-Waterman score: 3680; 100.0% identity (100.0% similar) in 529 aa overlap (1-529:1-529)
10 20 30 40 50 60
pF1KA1 MKPHLKQWRQRMLFGIFAWGLLFLLIFIYFTDSNPAEPVPSSLSFLETRRLLPVQGKQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MKPHLKQWRQRMLFGIFAWGLLFLLIFIYFTDSNPAEPVPSSLSFLETRRLLPVQGKQRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 IMGAAHEPSPPGGLDARQALPRAHPAGSFHAGPGDLQKWAQSQDGFEHKEFFSSQVGRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 IMGAAHEPSPPGGLDARQALPRAHPAGSFHAGPGDLQKWAQSQDGFEHKEFFSSQVGRKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 QSAFYPEDDDYFFAAGQPGWHSHTQGTLGFPSPGEPGPREGAFPAAQVQRRRVKKRHRRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 QSAFYPEDDDYFFAAGQPGWHSHTQGTLGFPSPGEPGPREGAFPAAQVQRRRVKKRHRRQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 RRSHVLEEGDDGDRLYSSMSRAFLYRLWKGNVSSKMLNPRLQKAMKDYLTANKHGVRFRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 RRSHVLEEGDDGDRLYSSMSRAFLYRLWKGNVSSKMLNPRLQKAMKDYLTANKHGVRFRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 KREAGLSRAQLLCQLRSRARVRTLDGTEAPFSALGWRRLVPAVPLSQLHPRGLRSCAVVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 KREAGLSRAQLLCQLRSRARVRTLDGTEAPFSALGWRRLVPAVPLSQLHPRGLRSCAVVM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 SAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNPSHHFIDSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 SAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNPSHHFIDSS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 LYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPKFIWQLWDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 LYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPKFIWQLWDI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 IQENTKEKIQPNPPSSGFIGILIMMSMCREVHVYEYIPSVRQTELCHYHELYYDAACTLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 IQENTKEKIQPNPPSSGFIGILIMMSMCREVHVYEYIPSVRQTELCHYHELYYDAACTLG
430 440 450 460 470 480
490 500 510 520
pF1KA1 AYHPLLYEKLLVQRLNMGTQGDLHRKGKVVLPGFQAVHCPAPSPVIPHS
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 AYHPLLYEKLLVQRLNMGTQGDLHRKGKVVLPGFQAVHCPAPSPVIPHS
490 500 510 520
>>CCDS46380.1 ST6GAL2 gene_id:84620|Hs108|chr2 (466 aa)
initn: 3060 init1: 3060 opt: 3060 Z-score: 3107.4 bits: 584.5 E(32554): 9.2e-167
Smith-Waterman score: 3060; 98.2% identity (99.1% similar) in 449 aa overlap (1-449:1-449)
10 20 30 40 50 60
pF1KA1 MKPHLKQWRQRMLFGIFAWGLLFLLIFIYFTDSNPAEPVPSSLSFLETRRLLPVQGKQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MKPHLKQWRQRMLFGIFAWGLLFLLIFIYFTDSNPAEPVPSSLSFLETRRLLPVQGKQRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 IMGAAHEPSPPGGLDARQALPRAHPAGSFHAGPGDLQKWAQSQDGFEHKEFFSSQVGRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IMGAAHEPSPPGGLDARQALPRAHPAGSFHAGPGDLQKWAQSQDGFEHKEFFSSQVGRKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 QSAFYPEDDDYFFAAGQPGWHSHTQGTLGFPSPGEPGPREGAFPAAQVQRRRVKKRHRRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QSAFYPEDDDYFFAAGQPGWHSHTQGTLGFPSPGEPGPREGAFPAAQVQRRRVKKRHRRQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 RRSHVLEEGDDGDRLYSSMSRAFLYRLWKGNVSSKMLNPRLQKAMKDYLTANKHGVRFRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RRSHVLEEGDDGDRLYSSMSRAFLYRLWKGNVSSKMLNPRLQKAMKDYLTANKHGVRFRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 KREAGLSRAQLLCQLRSRARVRTLDGTEAPFSALGWRRLVPAVPLSQLHPRGLRSCAVVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KREAGLSRAQLLCQLRSRARVRTLDGTEAPFSALGWRRLVPAVPLSQLHPRGLRSCAVVM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 SAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNPSHHFIDSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNPSHHFIDSS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 LYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPKFIWQLWDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPKFIWQLWDI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 IQENTKEKIQPNPPSSGFIGILIMMSMCREVHVYEYIPSVRQTELCHYHELYYDAACTLG
:::::::::::::::::::: .. .. :
CCDS46 IQENTKEKIQPNPPSSGFIGSFVKIGHIRACSEPRSRDCTPAWTTE
430 440 450 460
>>CCDS3285.1 ST6GAL1 gene_id:6480|Hs108|chr3 (406 aa)
initn: 722 init1: 722 opt: 1107 Z-score: 1127.4 bits: 217.9 E(32554): 1.8e-56
Smith-Waterman score: 1107; 48.9% identity (80.1% similar) in 317 aa overlap (205-519:93-406)
180 190 200 210 220 230
pF1KA1 KRHRRQRRSHVLEEGDDGDRLYSSMSRAFLYRLWKGNVSSKMLNPRLQKAMKDYLTANKH
...:. . ::: : ::::: :.::. ::.
CCDS32 VSSSSTQDPHRGRQTLGSLRGLAKAKPEASFQVWNKDSSSKNLIPRLQKIWKNYLSMNKY
70 80 90 100 110 120
240 250 260 270 280 290
pF1KA1 GVRFRGKREA-GLSRAQLLCQLRSRARVRTLDGTEAPFSALGWRRLVPAVPL-SQLHPRG
: ..: . .: : :.::... : .. :. ::.. :. .: . .. : :
CCDS32 KVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGYLPKESIRTKAGPWG
130 140 150 160 170 180
300 310 320 330 340 350
pF1KA1 LRSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNP
:::: :::.. .:.::.:::.::::::::.::: ....:::.:::::..:::..:.
CCDS32 --RCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTE
190 200 210 220 230 240
360 370 380 390 400 410
pF1KA1 SHHFIDSSLYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPK
.. :. .:::.. ::..:::. : ... ::..::::.:. : .:. .::::::::.:.
CCDS32 KR-FLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQ
250 260 270 280 290
420 430 440 450 460 470
pF1KA1 FIWQLWDIIQENTKEKIQPNPPSSGFIGILIMMSMCREVHVYEYIPSVRQTELCHYHELY
. :.::::.:: . :.:::::::::..::.:::..: .: .::..:: :.:..:.:.. .
CCDS32 MPWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKF
300 310 320 330 340 350
480 490 500 510 520
pF1KA1 YDAACTLGAYHPLLYEKLLVQRLNMGTQGDLHRKGKVVLPGFQAVHCPAPSPVIPHS
.:.:::.:::::::::: ::..::.::. :.. ::..::::...::
CCDS32 FDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC
360 370 380 390 400
>>CCDS46973.1 ST6GAL1 gene_id:6480|Hs108|chr3 (175 aa)
initn: 722 init1: 722 opt: 735 Z-score: 755.2 bits: 147.8 E(32554): 9.6e-36
Smith-Waterman score: 735; 52.8% identity (86.9% similar) in 176 aa overlap (344-519:1-175)
320 330 340 350 360 370
pF1KA1 IDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNPSHHFIDSSLYKDVILVAWDPA
.:::..:. .. :. .:::.. ::..:::.
CCDS46 MNSQLVTTEKR-FLKDSLYNEGILIVWDPS
10 20
380 390 400 410 420 430
pF1KA1 PYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPKFIWQLWDIIQENTKEKIQPNP
: ... ::..::::.:. : .:. .::::::::.:.. :.::::.:: . :.:::::
CCDS46 VYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNP
30 40 50 60 70 80
440 450 460 470 480 490
pF1KA1 PSSGFIGILIMMSMCREVHVYEYIPSVRQTELCHYHELYYDAACTLGAYHPLLYEKLLVQ
::::..::.:::..: .: .::..:: :.:..:.:.. ..:.:::.:::::::::: ::.
CCDS46 PSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVK
90 100 110 120 130 140
500 510 520
pF1KA1 RLNMGTQGDLHRKGKVVLPGFQAVHCPAPSPVIPHS
.::.::. :.. ::..::::...::
CCDS46 HLNQGTDEDIYLLGKATLPGFRTIHC
150 160 170
529 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:56:40 2016 done: Sat Nov 5 06:56:41 2016
Total Scan time: 3.250 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]