FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1878, 439 aa
  1>>>pF1KA1878 439 - 439 aa - 439 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.0659+/-0.000902; mu= -5.5803+/- 0.054
 mean_var=337.1237+/-68.553, 0's: 0 Z-trim(117.2): 7  B-trim: 180 in 1/51
 Lambda= 0.069852
 statistics sampled from 17922 (17929) to 17922 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.551), width:  16
 Scan time:  3.620

The best scores are:                                      opt bits E(32554)
CCDS44686.1 MAP6 gene_id:4135|Hs108|chr11          ( 439) 3007 316.1 4.5e-86
CCDS31641.1 MAP6 gene_id:4135|Hs108|chr11          ( 813) 3007 316.3 7.3e-86


>>CCDS44686.1 MAP6 gene_id:4135|Hs108|chr11               (439 aa)
 initn: 3007 init1: 3007 opt: 3007  Z-score: 1658.7  bits: 316.1 E(32554): 4.5e-86
Smith-Waterman score: 3007; 99.8% identity (100.0% similar) in 439 aa overlap (1-439:1-439)

               10        20        30        40        50        60
pF1KA1 MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 SARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 MRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 KAGPAWMVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSS
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 YRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 RSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTK
              370       380       390       400       410       420

              430         
pF1KA1 PDDKEQSKEMNNKLAEAKE
       :::::::::::::::::::
CCDS44 PDDKEQSKEMNNKLAEAKE
              430         

>>CCDS31641.1 MAP6 gene_id:4135|Hs108|chr11               (813 aa)
 initn: 3007 init1: 3007 opt: 3007  Z-score: 1655.0  bits: 316.3 E(32554): 7.3e-86
Smith-Waterman score: 3007; 99.8% identity (100.0% similar) in 439 aa overlap (1-439:1-439)

               10        20        30        40        50        60
pF1KA1 MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 SARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPADSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 MRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERDTRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 KAGPAWMVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSS
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KAGPAWIVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIREEVASAVSSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 YRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTADNKVIDRRRI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 RSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPTRKAKDKQAVSGQAAKKKSAEGPSTTK
              370       380       390       400       410       420

              430                                                  
pF1KA1 PDDKEQSKEMNNKLAEAKE                                         
       :::::::::::::::::::                                         
CCDS31 PDDKEQSKEMNNKLAEAKESLAQPVSDSSKTQGPVATEPDKDQGSVVPGLLKGQGPMVQE
              430       440       450       460       470       480




439 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:57:16 2016 done: Sat Nov  5 06:57:17 2016
 Total Scan time:  3.620 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]