FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1936, 804 aa
  1>>>pF1KA1936 804 - 804 aa - 804 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0468+/-0.000912; mu= 17.3332+/- 0.055
 mean_var=91.7900+/-18.926, 0's: 0 Z-trim(107.9): 53  B-trim: 514 in 1/49
 Lambda= 0.133868
 statistics sampled from 9809 (9850) to 9809 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.303), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS11013.1 SMYD4 gene_id:114826|Hs108|chr17       ( 804) 5425 1058.4       0


>>CCDS11013.1 SMYD4 gene_id:114826|Hs108|chr17            (804 aa)
 initn: 5425 init1: 5425 opt: 5425  Z-score: 5661.4  bits: 1058.4 E(32554):    0
Smith-Waterman score: 5425; 99.8% identity (99.8% similar) in 804 aa overlap (1-804:1-804)

               10        20        30        40        50        60
pF1KA1 MDLPVDEWKSYLLQKWASLPTSVQVTISTAETLRDIFLHSSSLLQPEDELFLKRLSKGYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MDLPVDEWKSYLLQKWASLPTSVQVTISTAETLRDIFLHSSSLLQPEDELFLKRLSKGYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 VGKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VGKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 QYETCLKDINIAQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALA
       :::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QYETCLKDINRAQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 DVLPQTLQRNLHRLKMKMQEKDSLTESFPAALAKTLEDAALREENEQLSNASSSIGLCVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DVLPQTLQRNLHRLKMKMQEKDSLTESFPAALAKTLEDAALREENEQLSNASSSIGLCVD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 PLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 KHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLTLGVFCHIALRLTLLVGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLTLGVFCHIALRLTLLVGF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 EDVRKIITKLCDKISNKDICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EDVRKIITKLCDKISNKDICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYEN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 NYNAVFNLLPHTENHSPEHKFLCALCVSALCRQLEAASLQAIPTERIVNSSQLKAAVTPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NYNAVFNLLPHTENHSPEHKFLCALCVSALCRQLEAASLQAIPTERIVNSSQLKAAVTPE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 LCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 SCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 ACQTEAHRMAAGPRWEAFCCNSCGAPMQGDDVLRCGSRSCAESAVSRDHLVSRLQDLQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ACQTEAHRMAAGPRWEAFCCNSCGAPMQGDDVLRCGSRSCAESAVSRDHLVSRLQDLQQQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 VRVAQKLLRDGELERAVQRLSGCQRDAESFLWAEHAVVGEIADGLARACAALGDWQKSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VRVAQKLLRDGELERAVQRLSGCQRDAESFLWAEHAVVGEIADGLARACAALGDWQKSAT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 HLQRSLCVVEVRHGPSSVEMGHELFKLAQIFFNGFAVPEALSTIQKAEEVLSLHCGPWDD
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HLQRSLYVVEVRHGPSSVEMGHELFKLAQIFFNGFAVPEALSTIQKAEEVLSLHCGPWDD
              730       740       750       760       770       780

              790       800    
pF1KA1 EIQELQKMKSCLLDLPPTPVGPAL
       ::::::::::::::::::::::::
CCDS11 EIQELQKMKSCLLDLPPTPVGPAL
              790       800    




804 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:17:33 2016 done: Wed Nov  2 22:17:34 2016
 Total Scan time:  3.380 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]