Result of FASTA (ccds) for pF1KA1966
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1966, 727 aa
  1>>>pF1KA1966 727 - 727 aa - 727 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4365+/-0.00125; mu= -4.3795+/- 0.077
 mean_var=466.2360+/-92.145, 0's: 0 Z-trim(114.8): 60  B-trim: 0 in 0/53
 Lambda= 0.059398
 statistics sampled from 15340 (15385) to 15340 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.473), width:  16
 Scan time:  4.650

The best scores are:                                      opt bits E(32554)
CCDS33992.1 YTHDC1 gene_id:91746|Hs108|chr4        ( 727) 4947 438.8 1.4e-122
CCDS82929.1 YTHDC1 gene_id:91746|Hs108|chr4        ( 735) 4921 436.5 6.7e-122
CCDS3522.2 YTHDC1 gene_id:91746|Hs108|chr4         ( 709) 3024 274.0 5.7e-73


>>CCDS33992.1 YTHDC1 gene_id:91746|Hs108|chr4             (727 aa)
 initn: 4947 init1: 4947 opt: 4947  Z-score: 2314.0  bits: 438.8 E(32554): 1.4e-122
Smith-Waterman score: 4947; 100.0% identity (100.0% similar) in 727 aa overlap (1-727:1-727)

               10        20        30        40        50        60
pF1KA1 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 RKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 PPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 DDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRG
              670       680       690       700       710       720

              
pF1KA1 ERGRYRR
       :::::::
CCDS33 ERGRYRR
              

>>CCDS82929.1 YTHDC1 gene_id:91746|Hs108|chr4             (735 aa)
 initn: 4089 init1: 3857 opt: 4921  Z-score: 2301.9  bits: 436.5 E(32554): 6.7e-122
Smith-Waterman score: 4921; 98.9% identity (98.9% similar) in 735 aa overlap (1-727:1-735)

               10        20        30        40        50        60
pF1KA1 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 RKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
              490       500       510       520       530       540

              550       560       570               580       590  
pF1KA1 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVD--------RRFSGVRRDVFLNGSYNDY
       :::::::::::::::::::::::::::::::::        :::::::::::::::::::
CCDS82 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDSFTNLIPNRRFSGVRRDVFLNGSYNDY
              550       560       570       580       590       600

            600       610       620       630       640       650  
pF1KA1 VREFHNMGPPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VREFHNMGPPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKR
              610       620       630       640       650       660

            660       670       680       690       700       710  
pF1KA1 VHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERL
              670       680       690       700       710       720

            720       
pF1KA1 CDRDRDRGERGRYRR
       :::::::::::::::
CCDS82 CDRDRDRGERGRYRR
              730     

>>CCDS3522.2 YTHDC1 gene_id:91746|Hs108|chr4              (709 aa)
 initn: 2860 init1: 2860 opt: 3024  Z-score: 1423.6  bits: 274.0 E(32554): 5.7e-73
Smith-Waterman score: 4793; 97.5% identity (97.5% similar) in 727 aa overlap (1-727:1-709)

               10        20        30        40        50        60
pF1KA1 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 RKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLI
       ::::::::::::::::::::::::                  ::::::::::::::::::
CCDS35 RKRARGISPIVFDRSGSSASESYA------------------DQTSKLKYVLQDARFFLI
              310       320                         330       340  

              370       380       390       400       410       420
pF1KA1 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
            350       360       370       380       390       400  

              430       440       450       460       470       480
pF1KA1 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
            410       420       430       440       450       460  

              490       500       510       520       530       540
pF1KA1 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
            470       480       490       500       510       520  

              550       560       570       580       590       600
pF1KA1 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMG
            530       540       550       560       570       580  

              610       620       630       640       650       660
pF1KA1 PPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV
            590       600       610       620       630       640  

              670       680       690       700       710       720
pF1KA1 DDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRG
            650       660       670       680       690       700  

              
pF1KA1 ERGRYRR
       :::::::
CCDS35 ERGRYRR
              




727 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:19:43 2016 done: Wed Nov  2 22:19:43 2016
 Total Scan time:  4.650 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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