FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA2001, 569 aa
  1>>>pF1KA2001 569 - 569 aa - 569 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.9586+/-0.00103; mu= -7.0687+/- 0.063
 mean_var=465.8624+/-92.284, 0's: 0 Z-trim(117.7): 12  B-trim: 0 in 0/55
 Lambda= 0.059422
 statistics sampled from 18473 (18483) to 18473 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.568), width:  16
 Scan time:  4.620

The best scores are:                                      opt bits E(32554)
CCDS55446.1 RGAG4 gene_id:340526|Hs108|chrX        ( 569) 3874 346.2 6.6e-95


>>CCDS55446.1 RGAG4 gene_id:340526|Hs108|chrX             (569 aa)
 initn: 3874 init1: 3874 opt: 3874  Z-score: 1817.4  bits: 346.2 E(32554): 6.6e-95
Smith-Waterman score: 3874; 100.0% identity (100.0% similar) in 569 aa overlap (1-569:1-569)

               10        20        30        40        50        60
pF1KA2 MSEASGNLNSLRMANVALREELNALRGENANLGLQLGRALAEVNSLRGNVSSYIRWPVPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSEASGNLNSLRMANVALREELNALRGENANLGLQLGRALAEVNSLRGNVSSYIRWPVPI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA2 VPVLAEENLEFALSEIEVIPGGELPFLCRPPPRAEPDCISDDLLINVIQDRSTPDGPADP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VPVLAEENLEFALSEIEVIPGGELPFLCRPPPRAEPDCISDDLLINVIQDRSTPDGPADP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA2 PLLPIPPPPALPPPASKEPPPQPPLAPLERPEIEPFSGDPVYLAEFLMQLETFIADHEVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PLLPIPPPPALPPPASKEPPPQPPLAPLERPEIEPFSGDPVYLAEFLMQLETFIADHEVH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA2 FPGGAERVAFLISFFTGEAKDWAISVTQEGSPLHANFPRFLDEIRKEFCGPIPPRVAKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FPGGAERVAFLISFFTGEAKDWAISVTQEGSPLHANFPRFLDEIRKEFCGPIPPRVAKKA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA2 IRKLKQGHCTLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEFFRKELLWSTEMADLDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IRKLKQGHCTLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEFFRKELLWSTEMADLDEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA2 ILECVEIERKVRVPKPIPLPGVRNIIFPFAPSPNEEESEDEEYYSEDEDQEARRHRLHSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ILECVEIERKVRVPKPIPLPGVRNIIFPFAPSPNEEESEDEEYYSEDEDQEARRHRLHSK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA2 DQRKRMRAFQQEMKEKEEEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DQRKRMRAFQQEMKEKEEEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGES
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA2 KDEEDEDEDGGQKPEGEPQQDPGTEETYGEVEEEPLDEAQDDDLDELMEMEPTFVHASSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KDEEDEDEDGGQKPEGEPQQDPGTEETYGEVEEEPLDEAQDDDLDELMEMEPTFVHASSQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA2 TSGPTSGYHAENFLGASPPIIQPSRRRNQNRVPLLEGLPGTNSPFYSSPQLIRRTGRLGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TSGPTSGYHAENFLGASPPIIQPSRRRNQNRVPLLEGLPGTNSPFYSSPQLIRRTGRLGQ
              490       500       510       520       530       540

              550       560         
pF1KA2 RQVRRRPPVLFRLTPRQGGHRAARGRIRV
       :::::::::::::::::::::::::::::
CCDS55 RQVRRRPPVLFRLTPRQGGHRAARGRIRV
              550       560         




569 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:29:17 2016 done: Thu Nov  3 11:29:17 2016
 Total Scan time:  4.620 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]