FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA2027, 776 aa
  1>>>pF1KA2027 776 - 776 aa - 776 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.6516+/-0.00101; mu= -3.2797+/- 0.061
 mean_var=273.4075+/-54.442, 0's: 0 Z-trim(113.2): 14  B-trim: 5 in 1/52
 Lambda= 0.077566
 statistics sampled from 13811 (13823) to 13811 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.425), width:  16
 Scan time:  5.020

The best scores are:                                      opt bits E(32554)
CCDS34030.1 GPRIN3 gene_id:285513|Hs108|chr4       ( 776) 5104 584.9 1.7e-166


>>CCDS34030.1 GPRIN3 gene_id:285513|Hs108|chr4            (776 aa)
 initn: 5104 init1: 5104 opt: 5104  Z-score: 3102.6  bits: 584.9 E(32554): 1.7e-166
Smith-Waterman score: 5104; 100.0% identity (100.0% similar) in 776 aa overlap (1-776:1-776)

               10        20        30        40        50        60
pF1KA2 MGTVPDPLRSAKTSLIAASGKEDDLGEPQAASPRHRPALLCKNANGFSGAPAEPDLSPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGTVPDPLRSAKTSLIAASGKEDDLGEPQAASPRHRPALLCKNANGFSGAPAEPDLSPRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA2 AAEALMQVCEHETTQPDMSSPGVFNEVQKAPATFNSPGNPQLPGSSQPAASAPSSAAGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AAEALMQVCEHETTQPDMSSPGVFNEVQKAPATFNSPGNPQLPGSSQPAASAPSSAAGRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA2 LIHTPLTMPANQHTCQSIPGDQPNAITSSMPEDSLMRSQRTSNREQPEKPSCPVGGVLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LIHTPLTMPANQHTCQSIPGDQPNAITSSMPEDSLMRSQRTSNREQPEKPSCPVGGVLSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA2 SKDQVSCEFPSPETIQGTVQTPVTAARVVSHSSSPVGGPEGERQGAICDSEMRSCKPLTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SKDQVSCEFPSPETIQGTVQTPVTAARVVSHSSSPVGGPEGERQGAICDSEMRSCKPLTR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA2 ESGCSENKQPSVTASGPQGTTSVTPQPTPLTSEPSACPPGPEKVPLPAQRQMSRFKEAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ESGCSENKQPSVTASGPQGTTSVTPQPTPLTSEPSACPPGPEKVPLPAQRQMSRFKEAST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA2 MTNQAESEIKEVPSRAWQDAEVQAVASVESRSVSTSPSILTAFLKESRAPEHFEQEQLRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MTNQAESEIKEVPSRAWQDAEVQAVASVESRSVSTSPSILTAFLKESRAPEHFEQEQLRV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA2 ICHSSGSHTLELSDSTLAPQESSQCPGIMPQVHIQAAAAESTAFQRENKLASLPGGVLKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ICHSSGSHTLELSDSTLAPQESSQCPGIMPQVHIQAAAAESTAFQRENKLASLPGGVLKT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA2 SSINLVSSNAQHTCKEDGRLAGMTPVREESTAKKLAGTNSSSLKATAIDQISISACSQAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SSINLVSSNAQHTCKEDGRLAGMTPVREESTAKKLAGTNSSSLKATAIDQISISACSQAE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA2 TSYGLGKFETRPSEFAEKTTNGHKTDPDCKLSDSCGSISKADHSGSLDPTNKGDAREKKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSYGLGKFETRPSEFAEKTTNGHKTDPDCKLSDSCGSISKADHSGSLDPTNKGDAREKKP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA2 ASPQVVKEKESTGTDTSDAKTLLLNPKSQESGGTESAANPTPSPIRKNQESTLEENRQTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ASPQVVKEKESTGTDTSDAKTLLLNPKSQESGGTESAANPTPSPIRKNQESTLEENRQTK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA2 TATSLSLPSDPMGDSSPGSGKKTPSRSVKASPRRPSRVSEFLKEQKLNVTAAAAQVGLTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TATSLSLPSDPMGDSSPGSGKKTPSRSVKASPRRPSRVSEFLKEQKLNVTAAAAQVGLTP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA2 GDKKKQLGADSKLQLKQSKRVRDVVWDEQGMTWEVYGASLDAESLGIAIQNHLQRQIREH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GDKKKQLGADSKLQLKQSKRVRDVVWDEQGMTWEVYGASLDAESLGIAIQNHLQRQIREH
              670       680       690       700       710       720

              730       740       750       760       770      
pF1KA2 EKLIKTQNSQTRRSISSDTSSNKKLRGRQHSVFQSMLQNFRRPNCCVRPAPSSVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EKLIKTQNSQTRRSISSDTSSNKKLRGRQHSVFQSMLQNFRRPNCCVRPAPSSVLD
              730       740       750       760       770      




776 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:00:39 2016 done: Sat Nov  5 07:00:40 2016
 Total Scan time:  5.020 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]