FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA2032, 944 aa
  1>>>pF1KA2032 944 - 944 aa - 944 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.5496+/-0.0012; mu= -21.4600+/- 0.072
 mean_var=507.7216+/-106.787, 0's: 0 Z-trim(114.5): 82  B-trim: 0 in 0/52
 Lambda= 0.056920
 statistics sampled from 15042 (15107) to 15042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.464), width:  16
 Scan time:  4.960

The best scores are:                                      opt bits E(32554)
CCDS9368.2 PROSER1 gene_id:80209|Hs108|chr13       ( 944) 6176 522.4 1.6e-147


>>CCDS9368.2 PROSER1 gene_id:80209|Hs108|chr13            (944 aa)
 initn: 6176 init1: 6176 opt: 6176  Z-score: 2762.2  bits: 522.4 E(32554): 1.6e-147
Smith-Waterman score: 6176; 100.0% identity (100.0% similar) in 944 aa overlap (1-944:1-944)

               10        20        30        40        50        60
pF1KA2 MDKKSFEMVLDEIRKAVLTEYKLKAIEYVHGYFSSEQVVDLLRYFSWAEPQLKAMKALQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MDKKSFEMVLDEIRKAVLTEYKLKAIEYVHGYFSSEQVVDLLRYFSWAEPQLKAMKALQH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA2 KMVAVQPTEVVNILNCFTFSKDKLVALELLASNIIDAQNSRPIEDLFRVNMSEKKRCKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 KMVAVQPTEVVNILNCFTFSKDKLVALELLASNIIDAQNSRPIEDLFRVNMSEKKRCKRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA2 LEQAFKGGCKAPHAMISSCGTIPGNPYPKGRPSRINGIFPGTPLKKDGEECTNEGKGIAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LEQAFKGGCKAPHAMISSCGTIPGNPYPKGRPSRINGIFPGTPLKKDGEECTNEGKGIAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA2 RILGPSKPPPSTYNPHKPVPYPIPPCRPHATIAPSAYNNAGLVPLANVIAPPPPPYTPNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 RILGPSKPPPSTYNPHKPVPYPIPPCRPHATIAPSAYNNAGLVPLANVIAPPPPPYTPNP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA2 VGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNPSTPAATPVPTASPVKAINHPSASAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNPSTPAATPVPTASPVKAINHPSASAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA2 ATVSGMNLLNTVLPVFPGQVSSAVHTPQPSIPNPTVIRTPSLPTAPVTSIHSTTTTPVPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ATVSGMNLLNTVLPVFPGQVSSAVHTPQPSIPNPTVIRTPSLPTAPVTSIHSTTTTPVPS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA2 IFSGLVSLPGPSATPTAATPTPGPTPRSTLGSSEAFASTSAPFTSLPFSTSSSAASTSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 IFSGLVSLPGPSATPTAATPTPGPTPRSTLGSSEAFASTSAPFTSLPFSTSSSAASTSNP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA2 NSASLSSVFAGLPLPLPPTSQGLSNPTPVIAGGSTPSVAGPLGVNSPLLSALKGFLTSND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 NSASLSSVFAGLPLPLPPTSQGLSNPTPVIAGGSTPSVAGPLGVNSPLLSALKGFLTSND
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA2 TNLINSSALSSAVTSGLASLSSLTLQNSDSSASAPNKCYAPSAIPTPQRTSTPGLALFPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 TNLINSSALSSAVTSGLASLSSLTLQNSDSSASAPNKCYAPSAIPTPQRTSTPGLALFPG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA2 LPSPVANSTSTPLTLPVQSPLATAASASTSVPVSCGSSASLLRGPHPGTSDLHISSTPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LPSPVANSTSTPLTLPVQSPLATAASASTSVPVSCGSSASLLRGPHPGTSDLHISSTPAA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA2 TTLPVMIKTEPTSPTPSAFKGPSHSGNPSHGTLGLSGTLGRAYTSTSVPISLSACLNPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 TTLPVMIKTEPTSPTPSAFKGPSHSGNPSHGTLGLSGTLGRAYTSTSVPISLSACLNPAL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA2 SGLSSLSTPLNGSNPLSSISLPPHGSSTPIAPVFTALPSFTSLTNNFPLTGNPSLNPSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SGLSSLSTPLNGSNPLSSISLPPHGSSTPIAPVFTALPSFTSLTNNFPLTGNPSLNPSVS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA2 LPGSLIATSSTAATSTSLPHPSSTAAVLSGLSASAPVSAAPFPLNLSTAVPSLFSVTQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LPGSLIATSSTAATSTSLPHPSSTAAVLSGLSASAPVSAAPFPLNLSTAVPSLFSVTQGP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA2 LSSSNPSYPGFSVSNTPSVTPALPSFPGLQAPSTVAAVTPLPVAATAPSPAPVLPGFASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LSSSNPSYPGFSVSNTPSVTPALPSFPGLQAPSTVAAVTPLPVAATAPSPAPVLPGFASA
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA2 FSSNFNSALVAQAGLSSGLQAAGSSVFPGLLSLPGIPGFPQNPSQSSLQELQHNAAAQSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 FSSNFNSALVAQAGLSSGLQAAGSSVFPGLLSLPGIPGFPQNPSQSSLQELQHNAAAQSA
              850       860       870       880       890       900

              910       920       930       940    
pF1KA2 LLQQVHSASALESYPAQPDGFPSYPSAPGTPFSLQPSLSQSGWQ
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LLQQVHSASALESYPAQPDGFPSYPSAPGTPFSLQPSLSQSGWQ
              910       920       930       940    




944 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:27:38 2016 done: Wed Nov  2 22:27:39 2016
 Total Scan time:  4.960 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]