FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0026, 1058 aa
  1>>>pF1KB0026 1058 - 1058 aa - 1058 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6734+/-0.000968; mu= 10.5448+/- 0.058
 mean_var=113.0727+/-22.922, 0's: 0 Z-trim(108.0): 19  B-trim: 0 in 0/50
 Lambda= 0.120613
 statistics sampled from 9897 (9905) to 9897 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.304), width:  16
 Scan time:  5.250

The best scores are:                                      opt bits E(32554)
CCDS12676.2 SYMPK gene_id:8189|Hs108|chr19         (1274) 6148 1081.3       0


>>CCDS12676.2 SYMPK gene_id:8189|Hs108|chr19              (1274 aa)
 initn: 6148 init1: 6148 opt: 6148  Z-score: 5779.5  bits: 1081.3 E(32554):    0
Smith-Waterman score: 6148; 99.7% identity (99.8% similar) in 968 aa overlap (1-968:1-968)

               10        20        30        40        50        60
pF1KB0 MASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 THAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 THAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDTRKRPRDDSDSTLKKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDTRKRPRDDSDSTLKKM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB0 VVKTESVLIKRRLSAQGQAISVVGSLSSMSPLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VVKTESVLIKRRLSAQGQAISVVGSLSSMSPLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB0 KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFNSGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFNSGL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB0 KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGSLDKYEDCLIRLLSGLQEKPDQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGSLDKYEDCLIRLLSGLQEKPDQK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB0 DGIFTKVVLEAPLITESALEVVRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DGIFTKVVLEAPLITESALEVVRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB0 SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB0 PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB0 LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB0 KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB0 SIIKGEALPPHSSGLAPATPGQDLSHPHAPTGICQVKDCHSQPHLRALESHLPPSLLFLP
       ::::.  :                                                    
CCDS12 SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
              970       980       990      1000      1010      1020




1058 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:35:16 2016 done: Sat Nov  5 02:35:17 2016
 Total Scan time:  5.250 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]