FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0170, 1071 aa
  1>>>pF1KB0170 1071 - 1071 aa - 1071 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7834+/-0.00134; mu= 18.5790+/- 0.080
 mean_var=63.5454+/-12.713, 0's: 0 Z-trim(99.1): 39  B-trim: 0 in 0/50
 Lambda= 0.160891
 statistics sampled from 5593 (5604) to 5593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.507), E-opt: 0.2 (0.172), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(32554)
CCDS33205.1 XPO1 gene_id:7514|Hs108|chr2           (1071) 7064 1649.5       0


>>CCDS33205.1 XPO1 gene_id:7514|Hs108|chr2                (1071 aa)
 initn: 7064 init1: 7064 opt: 7064  Z-score: 8851.3  bits: 1649.5 E(32554):    0
Smith-Waterman score: 7064; 100.0% identity (100.0% similar) in 1071 aa overlap (1-1071:1-1071)

               10        20        30        40        50        60
pF1KB0 MPAIMTMLADHAARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MPAIMTMLADHAARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 TRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 EKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 FSSGQITQVKSKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FSSGQITQVKSKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 IFETKLISTLIYKFLNVPMFRNVSLKCLTEIAGVSVSQYEEQFVTLFTLTMMQLKQMLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IFETKLISTLIYKFLNVPMFRNVSLKCLTEIAGVSVSQYEEQFVTLFTLTMMQLKQMLPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 NTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHDQLIEKRLNLRETLMEALHYMLLVSEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHDQLIEKRLNLRETLMEALHYMLLVSEV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 EETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDVPPRRQLYLPMLFKVRLLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDVPPRRQLYLPMLFKVRLLM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTERIMTEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTERIMTEKL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB0 HNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB0 ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB0 QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB0 PNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB0 YKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB0 LDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB0 YPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB0 LQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKIST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKIST
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB0 SLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLV
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070 
pF1KB0 QIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGIFNPHEIPEEMCD
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGIFNPHEIPEEMCD
             1030      1040      1050      1060      1070 




1071 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:01:45 2016 done: Fri Nov  4 02:01:46 2016
 Total Scan time:  3.170 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]