FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0410, 822 aa
  1>>>pF1KB0410 822 - 822 aa - 822 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7633+/-0.000907; mu= 20.2024+/- 0.055
 mean_var=98.0266+/-19.600, 0's: 0 Z-trim(108.3): 6  B-trim: 0 in 0/52
 Lambda= 0.129540
 statistics sampled from 10137 (10138) to 10137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.311), width:  16
 Scan time:  3.920

The best scores are:                                      opt bits E(32554)
CCDS6953.1 GTF3C4 gene_id:9329|Hs108|chr9          ( 822) 5575 1052.8       0


>>CCDS6953.1 GTF3C4 gene_id:9329|Hs108|chr9               (822 aa)
 initn: 5575 init1: 5575 opt: 5575  Z-score: 5630.5  bits: 1052.8 E(32554):    0
Smith-Waterman score: 5575; 100.0% identity (100.0% similar) in 822 aa overlap (1-822:1-822)

               10        20        30        40        50        60
pF1KB0 MNTADQARVGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFRLMVTRREPAVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MNTADQARVGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFRLMVTRREPAVKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 GSKTEVAECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GSKTEVAECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 LLAALTMDNRLTIQANLNRLQWVQLVDLTEIYGERLYETSYRLSKNEAPEGNLGDFAEFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LLAALTMDNRLTIQANLNRLQWVQLVDLTEIYGERLYETSYRLSKNEAPEGNLGDFAEFQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 RRHSMQTPVRMEWSGICTTQQVKHNNECRDVGSVLLAVLFENGNIAVWQFQLPFVGKESI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RRHSMQTPVRMEWSGICTTQQVKHNNECRDVGSVLLAVLFENGNIAVWQFQLPFVGKESI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 SSCNTIESGITSPSVLFWWEYEHNNRKMSGLIVGSAFGPIKILPVNLKAVKGYFTLRQPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SSCNTIESGITSPSVLFWWEYEHNNRKMSGLIVGSAFGPIKILPVNLKAVKGYFTLRQPV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 ILWKEMDQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ILWKEMDQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 LHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB0 AVSPCGAYLAIITTEGMINGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 AVSPCGAYLAIITTEGMINGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB0 DLVRWKILKDKHIPQFLQEALEKKIESSGVTYFWRFKLFLLRILYQSMQKTPSEALWKPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 DLVRWKILKDKHIPQFLQEALEKKIESSGVTYFWRFKLFLLRILYQSMQKTPSEALWKPT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB0 HEDSKILLVDSPGMGNADDEQQEEGTSSKQVVKQGLQERSKEGDVEEPTDDSLPTTGDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 HEDSKILLVDSPGMGNADDEQQEEGTSSKQVVKQGLQERSKEGDVEEPTDDSLPTTGDAG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB0 GREPMEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GREPMEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB0 EYDDRTARVLIGHISKKMNKQTFPEHCSLCKEILPFTDRKQAVCSNGHIWLRCFLTYQSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EYDDRTARVLIGHISKKMNKQTFPEHCSLCKEILPFTDRKQAVCSNGHIWLRCFLTYQSC
              730       740       750       760       770       780

              790       800       810       820  
pF1KB0 QSLIYRRCLLHDSIARHPAPEDPDWIKRLLQSPCPFCDSPVF
       ::::::::::::::::::::::::::::::::::::::::::
CCDS69 QSLIYRRCLLHDSIARHPAPEDPDWIKRLLQSPCPFCDSPVF
              790       800       810       820  




822 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:46:50 2016 done: Sat Nov  5 16:46:51 2016
 Total Scan time:  3.920 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]