Result of FASTA (omim) for
pF1KB0410
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0410, 822 aa
1>>>pF1KB0410 822 - 822 aa - 822 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5940+/-0.000392; mu= 21.1059+/- 0.025
mean_var=101.1861+/-20.608, 0's: 0 Z-trim(115.0): 6 B-trim: 403 in 1/52
Lambda= 0.127501
statistics sampled from 25124 (25127) to 25124 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.295), width: 16
Scan time: 12.900
The best scores are: opt bits E(85289)
NP_036336 (OMIM: 604892) general transcription fac ( 822) 5575 1036.7 0
XP_016870806 (OMIM: 604892) PREDICTED: general tra ( 754) 4881 909.0 0
XP_016870807 (OMIM: 604892) PREDICTED: general tra ( 234) 936 182.8 1.5e-45
>>NP_036336 (OMIM: 604892) general transcription factor (822 aa)
initn: 5575 init1: 5575 opt: 5575 Z-score: 5543.5 bits: 1036.7 E(85289): 0
Smith-Waterman score: 5575; 100.0% identity (100.0% similar) in 822 aa overlap (1-822:1-822)
10 20 30 40 50 60
pF1KB0 MNTADQARVGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFRLMVTRREPAVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MNTADQARVGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFRLMVTRREPAVKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 QYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GSKTEVAECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GSKTEVAECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 LLAALTMDNRLTIQANLNRLQWVQLVDLTEIYGERLYETSYRLSKNEAPEGNLGDFAEFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LLAALTMDNRLTIQANLNRLQWVQLVDLTEIYGERLYETSYRLSKNEAPEGNLGDFAEFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 RRHSMQTPVRMEWSGICTTQQVKHNNECRDVGSVLLAVLFENGNIAVWQFQLPFVGKESI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RRHSMQTPVRMEWSGICTTQQVKHNNECRDVGSVLLAVLFENGNIAVWQFQLPFVGKESI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 SSCNTIESGITSPSVLFWWEYEHNNRKMSGLIVGSAFGPIKILPVNLKAVKGYFTLRQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SSCNTIESGITSPSVLFWWEYEHNNRKMSGLIVGSAFGPIKILPVNLKAVKGYFTLRQPV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 ILWKEMDQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ILWKEMDQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 LHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB0 AVSPCGAYLAIITTEGMINGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AVSPCGAYLAIITTEGMINGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB0 DLVRWKILKDKHIPQFLQEALEKKIESSGVTYFWRFKLFLLRILYQSMQKTPSEALWKPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DLVRWKILKDKHIPQFLQEALEKKIESSGVTYFWRFKLFLLRILYQSMQKTPSEALWKPT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB0 HEDSKILLVDSPGMGNADDEQQEEGTSSKQVVKQGLQERSKEGDVEEPTDDSLPTTGDAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 HEDSKILLVDSPGMGNADDEQQEEGTSSKQVVKQGLQERSKEGDVEEPTDDSLPTTGDAG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB0 GREPMEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GREPMEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB0 EYDDRTARVLIGHISKKMNKQTFPEHCSLCKEILPFTDRKQAVCSNGHIWLRCFLTYQSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EYDDRTARVLIGHISKKMNKQTFPEHCSLCKEILPFTDRKQAVCSNGHIWLRCFLTYQSC
730 740 750 760 770 780
790 800 810 820
pF1KB0 QSLIYRRCLLHDSIARHPAPEDPDWIKRLLQSPCPFCDSPVF
::::::::::::::::::::::::::::::::::::::::::
NP_036 QSLIYRRCLLHDSIARHPAPEDPDWIKRLLQSPCPFCDSPVF
790 800 810 820
>>XP_016870806 (OMIM: 604892) PREDICTED: general transcr (754 aa)
initn: 4877 init1: 4877 opt: 4881 Z-score: 4854.0 bits: 909.0 E(85289): 0
Smith-Waterman score: 4881; 98.8% identity (99.5% similar) in 739 aa overlap (1-736:1-739)
10 20 30 40 50 60
pF1KB0 MNTADQARVGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFRLMVTRREPAVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNTADQARVGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFRLMVTRREPAVKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GSKTEVAECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSKTEVAECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 LLAALTMDNRLTIQANLNRLQWVQLVDLTEIYGERLYETSYRLSKNEAPEGNLGDFAEFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLAALTMDNRLTIQANLNRLQWVQLVDLTEIYGERLYETSYRLSKNEAPEGNLGDFAEFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 RRHSMQTPVRMEWSGICTTQQVKHNNECRDVGSVLLAVLFENGNIAVWQFQLPFVGKESI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRHSMQTPVRMEWSGICTTQQVKHNNECRDVGSVLLAVLFENGNIAVWQFQLPFVGKESI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 SSCNTIESGITSPSVLFWWEYEHNNRKMSGLIVGSAFGPIKILPVNLKAVKGYFTLRQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSCNTIESGITSPSVLFWWEYEHNNRKMSGLIVGSAFGPIKILPVNLKAVKGYFTLRQPV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 ILWKEMDQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILWKEMDQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 LHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB0 AVSPCGAYLAIITTEGMINGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVSPCGAYLAIITTEGMINGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB0 DLVRWKILKDKHIPQFLQEALEKKIESSGVTYFWRFKLFLLRILYQSMQKTPSEALWKPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLVRWKILKDKHIPQFLQEALEKKIESSGVTYFWRFKLFLLRILYQSMQKTPSEALWKPT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB0 HEDSKILLVDSPGMGNADDEQQEEGTSSKQVVKQGLQERSKEGDVEEPTDDSLPTTGDAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HEDSKILLVDSPGMGNADDEQQEEGTSSKQVVKQGLQERSKEGDVEEPTDDSLPTTGDAG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB0 GREPMEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GREPMEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDE
670 680 690 700 710 720
730 740 750 760 770
pF1KB0 EYDDRTAR---VLIGHISKKMNKQTFPEHCSLCKEILPFTDRKQAVCSNGHIWLRCFLTY
:::::::: .:... .:
XP_016 EYDDRTARNSEILVSEATKTRQVIRFWFSEQFSP
730 740 750
>>XP_016870807 (OMIM: 604892) PREDICTED: general transcr (234 aa)
initn: 936 init1: 936 opt: 936 Z-score: 938.7 bits: 182.8 E(85289): 1.5e-45
Smith-Waterman score: 936; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)
10 20 30 40 50 60
pF1KB0 MNTADQARVGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFRLMVTRREPAVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNTADQARVGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFRLMVTRREPAVKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 QYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GSKTEVAECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRC
:::::::::::::::::::::
XP_016 GSKTEVAECKEKFAASKDPTVLIGHISKKMNKQTFPEHCSLCKEILPFTDRKQAVCSNGH
130 140 150 160 170 180
>--
initn: 693 init1: 693 opt: 693 Z-score: 697.1 bits: 138.1 E(85289): 4.3e-32
Smith-Waterman score: 693; 100.0% identity (100.0% similar) in 93 aa overlap (730-822:142-234)
700 710 720 730 740 750
pF1KB0 WITENTSIPTRGLCNFLMSDEEYDDRTARVLIGHISKKMNKQTFPEHCSLCKEILPFTDR
::::::::::::::::::::::::::::::
XP_016 PLNSCLLKVGSKTEVAECKEKFAASKDPTVLIGHISKKMNKQTFPEHCSLCKEILPFTDR
120 130 140 150 160 170
760 770 780 790 800 810
pF1KB0 KQAVCSNGHIWLRCFLTYQSCQSLIYRRCLLHDSIARHPAPEDPDWIKRLLQSPCPFCDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQAVCSNGHIWLRCFLTYQSCQSLIYRRCLLHDSIARHPAPEDPDWIKRLLQSPCPFCDS
180 190 200 210 220 230
820
pF1KB0 PVF
:::
XP_016 PVF
822 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:46:51 2016 done: Sat Nov 5 16:46:53 2016
Total Scan time: 12.900 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]