Result of FASTA (omim) for
pF1KB0419
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0419, 472 aa
1>>>pF1KB0419 472 - 472 aa - 472 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4309+/-0.00047; mu= 14.8185+/- 0.030
mean_var=181.7976+/-39.679, 0's: 0 Z-trim(115.1): 124 B-trim: 118 in 1/49
Lambda= 0.095122
statistics sampled from 25234 (25369) to 25234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.297), width: 16
Scan time: 9.600
The best scores are: opt bits E(85289)
XP_005265952 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 3241 457.6 3.3e-128
XP_005265953 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 3241 457.6 3.3e-128
XP_011532844 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 3241 457.6 3.3e-128
XP_011532848 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 3241 457.6 3.3e-128
XP_011532847 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 3241 457.6 3.3e-128
XP_011532846 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 3241 457.6 3.3e-128
NP_001244222 (OMIM: 601035) heterogeneous nuclear ( 449) 2991 423.3 6.7e-118
NP_005511 (OMIM: 601035) heterogeneous nuclear rib ( 449) 2991 423.3 6.7e-118
XP_016864906 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 2991 423.3 6.7e-118
XP_016864905 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 2991 423.3 6.7e-118
XP_016864904 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 2991 423.3 6.7e-118
NP_062543 (OMIM: 300610,300986) heterogeneous nucl ( 449) 2907 411.8 2e-114
NP_001027565 (OMIM: 300610,300986) heterogeneous n ( 449) 2907 411.8 2e-114
XP_011532849 (OMIM: 601035) PREDICTED: heterogeneo ( 462) 2781 394.5 3.2e-109
XP_016864907 (OMIM: 601035) PREDICTED: heterogeneo ( 439) 2736 388.3 2.3e-107
XP_006714925 (OMIM: 601035) PREDICTED: heterogeneo ( 452) 2636 374.6 3.1e-103
XP_016864903 (OMIM: 601035) PREDICTED: heterogeneo ( 452) 2636 374.6 3.1e-103
XP_016864908 (OMIM: 601035) PREDICTED: heterogeneo ( 429) 2611 371.1 3.3e-102
XP_006714926 (OMIM: 601035) PREDICTED: heterogeneo ( 429) 2611 371.1 3.3e-102
NP_004957 (OMIM: 601037) heterogeneous nuclear rib ( 415) 2128 304.8 2.9e-82
NP_001091678 (OMIM: 601037) heterogeneous nuclear ( 415) 2128 304.8 2.9e-82
NP_001091677 (OMIM: 601037) heterogeneous nuclear ( 415) 2128 304.8 2.9e-82
NP_001091675 (OMIM: 601037) heterogeneous nuclear ( 415) 2128 304.8 2.9e-82
NP_001091674 (OMIM: 601037) heterogeneous nuclear ( 415) 2128 304.8 2.9e-82
NP_001091676 (OMIM: 601037) heterogeneous nuclear ( 415) 2128 304.8 2.9e-82
XP_005265958 (OMIM: 601035) PREDICTED: heterogeneo ( 271) 1885 271.3 2.4e-72
XP_005265959 (OMIM: 601035) PREDICTED: heterogeneo ( 271) 1885 271.3 2.4e-72
XP_016864911 (OMIM: 601035) PREDICTED: heterogeneo ( 248) 1635 236.9 4.9e-62
XP_016864910 (OMIM: 601035) PREDICTED: heterogeneo ( 248) 1635 236.9 4.9e-62
NP_001309363 (OMIM: 602324) heterogeneous nuclear ( 346) 1422 207.8 3.8e-53
NP_001309365 (OMIM: 602324) heterogeneous nuclear ( 346) 1422 207.8 3.8e-53
XP_016871657 (OMIM: 602324) PREDICTED: heterogeneo ( 346) 1422 207.8 3.8e-53
NP_001309366 (OMIM: 602324) heterogeneous nuclear ( 346) 1422 207.8 3.8e-53
NP_036339 (OMIM: 602324) heterogeneous nuclear rib ( 346) 1422 207.8 3.8e-53
XP_016864913 (OMIM: 601035) PREDICTED: heterogeneo ( 266) 1409 205.9 1.1e-52
NP_001309372 (OMIM: 602324) heterogeneous nuclear ( 340) 1400 204.8 3e-52
NP_001309371 (OMIM: 602324) heterogeneous nuclear ( 340) 1400 204.8 3e-52
XP_016864912 (OMIM: 601035) PREDICTED: heterogeneo ( 238) 1380 201.9 1.6e-51
XP_016864909 (OMIM: 601035) PREDICTED: heterogeneo ( 251) 1280 188.2 2.3e-47
XP_016864914 (OMIM: 601035) PREDICTED: heterogeneo ( 228) 1255 184.7 2.3e-46
NP_067676 (OMIM: 602324) heterogeneous nuclear rib ( 331) 756 116.4 1.2e-25
NP_001309368 (OMIM: 602324) heterogeneous nuclear ( 331) 756 116.4 1.2e-25
NP_001309370 (OMIM: 602324) heterogeneous nuclear ( 331) 756 116.4 1.2e-25
NP_001309369 (OMIM: 602324) heterogeneous nuclear ( 331) 756 116.4 1.2e-25
NP_001309367 (OMIM: 602324) heterogeneous nuclear ( 331) 756 116.4 1.2e-25
XP_016871658 (OMIM: 602324) PREDICTED: heterogeneo ( 215) 727 112.2 1.4e-24
NP_001309376 (OMIM: 602324) heterogeneous nuclear ( 215) 727 112.2 1.4e-24
NP_001309374 (OMIM: 602324) heterogeneous nuclear ( 215) 727 112.2 1.4e-24
NP_001309375 (OMIM: 602324) heterogeneous nuclear ( 215) 727 112.2 1.4e-24
NP_001309378 (OMIM: 602324) heterogeneous nuclear ( 215) 727 112.2 1.4e-24
>>XP_005265952 (OMIM: 601035) PREDICTED: heterogeneous n (472 aa)
initn: 3241 init1: 3241 opt: 3241 Z-score: 2422.8 bits: 457.6 E(85289): 3.3e-128
Smith-Waterman score: 3241; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)
10 20 30 40 50 60
pF1KB0 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440 450 460 470
pF1KB0 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
430 440 450 460 470
>>XP_005265953 (OMIM: 601035) PREDICTED: heterogeneous n (472 aa)
initn: 3241 init1: 3241 opt: 3241 Z-score: 2422.8 bits: 457.6 E(85289): 3.3e-128
Smith-Waterman score: 3241; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)
10 20 30 40 50 60
pF1KB0 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440 450 460 470
pF1KB0 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
430 440 450 460 470
>>XP_011532844 (OMIM: 601035) PREDICTED: heterogeneous n (472 aa)
initn: 3241 init1: 3241 opt: 3241 Z-score: 2422.8 bits: 457.6 E(85289): 3.3e-128
Smith-Waterman score: 3241; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)
10 20 30 40 50 60
pF1KB0 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440 450 460 470
pF1KB0 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
430 440 450 460 470
>>XP_011532848 (OMIM: 601035) PREDICTED: heterogeneous n (472 aa)
initn: 3241 init1: 3241 opt: 3241 Z-score: 2422.8 bits: 457.6 E(85289): 3.3e-128
Smith-Waterman score: 3241; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)
10 20 30 40 50 60
pF1KB0 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440 450 460 470
pF1KB0 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
430 440 450 460 470
>>XP_011532847 (OMIM: 601035) PREDICTED: heterogeneous n (472 aa)
initn: 3241 init1: 3241 opt: 3241 Z-score: 2422.8 bits: 457.6 E(85289): 3.3e-128
Smith-Waterman score: 3241; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)
10 20 30 40 50 60
pF1KB0 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440 450 460 470
pF1KB0 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
430 440 450 460 470
>>XP_011532846 (OMIM: 601035) PREDICTED: heterogeneous n (472 aa)
initn: 3241 init1: 3241 opt: 3241 Z-score: 2422.8 bits: 457.6 E(85289): 3.3e-128
Smith-Waterman score: 3241; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)
10 20 30 40 50 60
pF1KB0 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440 450 460 470
pF1KB0 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
430 440 450 460 470
>>NP_001244222 (OMIM: 601035) heterogeneous nuclear ribo (449 aa)
initn: 3396 init1: 2991 opt: 2991 Z-score: 2237.6 bits: 423.3 E(85289): 6.7e-118
Smith-Waterman score: 2991; 98.0% identity (98.7% similar) in 446 aa overlap (1-446:1-446)
10 20 30 40 50 60
pF1KB0 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440 450 460 470
pF1KB0 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
::::::::::::: . ::: ..:
NP_001 GGGYGGQSSMSGYDQVLQENSSDFQSNIA
430 440
>>NP_005511 (OMIM: 601035) heterogeneous nuclear ribonuc (449 aa)
initn: 3396 init1: 2991 opt: 2991 Z-score: 2237.6 bits: 423.3 E(85289): 6.7e-118
Smith-Waterman score: 2991; 98.0% identity (98.7% similar) in 446 aa overlap (1-446:1-446)
10 20 30 40 50 60
pF1KB0 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440 450 460 470
pF1KB0 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
::::::::::::: . ::: ..:
NP_005 GGGYGGQSSMSGYDQVLQENSSDFQSNIA
430 440
>>XP_016864906 (OMIM: 601035) PREDICTED: heterogeneous n (449 aa)
initn: 3396 init1: 2991 opt: 2991 Z-score: 2237.6 bits: 423.3 E(85289): 6.7e-118
Smith-Waterman score: 2991; 98.0% identity (98.7% similar) in 446 aa overlap (1-446:1-446)
10 20 30 40 50 60
pF1KB0 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440 450 460 470
pF1KB0 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
::::::::::::: . ::: ..:
XP_016 GGGYGGQSSMSGYDQVLQENSSDFQSNIA
430 440
>>XP_016864905 (OMIM: 601035) PREDICTED: heterogeneous n (449 aa)
initn: 3396 init1: 2991 opt: 2991 Z-score: 2237.6 bits: 423.3 E(85289): 6.7e-118
Smith-Waterman score: 2991; 98.0% identity (98.7% similar) in 446 aa overlap (1-446:1-446)
10 20 30 40 50 60
pF1KB0 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNSTAGASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
370 380 390 400 410 420
430 440 450 460 470
pF1KB0 GGGYGGQSSMSGYGNQGAVNSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
::::::::::::: . ::: ..:
XP_016 GGGYGGQSSMSGYDQVLQENSSDFQSNIA
430 440
472 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:48:45 2016 done: Sat Nov 5 16:48:46 2016
Total Scan time: 9.600 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]