FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0421, 410 aa
  1>>>pF1KB0421 410 - 410 aa - 410 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8066+/-0.000677; mu= 10.7277+/- 0.041
 mean_var=98.2603+/-19.509, 0's: 0 Z-trim(113.0): 7  B-trim: 0 in 0/51
 Lambda= 0.129385
 statistics sampled from 13641 (13648) to 13641 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.419), width:  16
 Scan time:  3.480

The best scores are:                                      opt bits E(32554)
CCDS42702.1 AUP1 gene_id:550|Hs108|chr2            ( 410) 2748 522.8 2.4e-148


>>CCDS42702.1 AUP1 gene_id:550|Hs108|chr2                 (410 aa)
 initn: 2748 init1: 2748 opt: 2748  Z-score: 2776.9  bits: 522.8 E(32554): 2.4e-148
Smith-Waterman score: 2748; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410)

               10        20        30        40        50        60
pF1KB0 MELPSGPGPERLFDSHRLPGDCFLLLVLLLYAPVGFCLLVLRLFLGIHVFLVSCALPDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MELPSGPGPERLFDSHRLPGDCFLLLVLLLYAPVGFCLLVLRLFLGIHVFLVSCALPDSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LRRFVVRTMCAVLGLVARQEDSGLRDHSVRVLISNHVTPFDHNIVNLLTTCSTPLLNSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LRRFVVRTMCAVLGLVARQEDSGLRDHSVRVLISNHVTPFDHNIVNLLTTCSTPLLNSPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SFVCWSRGFMEMNGRGELVESLKRFCASTRLPPTPLLLFPEEEATNGREGLLRFSSWPFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SFVCWSRGFMEMNGRGELVESLKRFCASTRLPPTPLLLFPEEEATNGREGLLRFSSWPFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 IQDVVQPLTLQVQRPLVSVTVSDASWVSELLWSLFVPFTVYQVRWLRPVHRQLGEANEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IQDVVQPLTLQVQRPLVSVTVSDASWVSELLWSLFVPFTVYQVRWLRPVHRQLGEANEEF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 ALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQSSFPPSPGPSPDVQLATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQSSFPPSPGPSPDVQLATL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 AQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLEGAVAFMPEDITKGTQSLPTASASKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLEGAVAFMPEDITKGTQSLPTASASKF
              310       320       330       340       350       360

              370       380       390       400       410
pF1KB0 PSSGPVTPQPTALTFAKSSWARQESLQERKQALYEYARRRFTERRAQEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PSSGPVTPQPTALTFAKSSWARQESLQERKQALYEYARRRFTERRAQEAD
              370       380       390       400       410




410 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:49:23 2016 done: Sat Nov  5 16:49:24 2016
 Total Scan time:  3.480 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]