FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0421, 410 aa
  1>>>pF1KB0421 410 - 410 aa - 410 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6733+/-0.000292; mu= 11.7576+/- 0.018
 mean_var=105.3014+/-20.864, 0's: 0 Z-trim(120.3): 19  B-trim: 0 in 0/54
 Lambda= 0.124985
 statistics sampled from 35303 (35322) to 35303 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.414), width:  16
 Scan time: 10.140

The best scores are:                                      opt bits E(85289)
NP_853553 (OMIM: 602434) ancient ubiquitous protei ( 410) 2748 505.6  9e-143
XP_005264449 (OMIM: 602434) PREDICTED: ancient ubi ( 467) 2325 429.4 9.1e-120


>>NP_853553 (OMIM: 602434) ancient ubiquitous protein 1   (410 aa)
 initn: 2748 init1: 2748 opt: 2748  Z-score: 2684.2  bits: 505.6 E(85289): 9e-143
Smith-Waterman score: 2748; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410)

               10        20        30        40        50        60
pF1KB0 MELPSGPGPERLFDSHRLPGDCFLLLVLLLYAPVGFCLLVLRLFLGIHVFLVSCALPDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 MELPSGPGPERLFDSHRLPGDCFLLLVLLLYAPVGFCLLVLRLFLGIHVFLVSCALPDSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LRRFVVRTMCAVLGLVARQEDSGLRDHSVRVLISNHVTPFDHNIVNLLTTCSTPLLNSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 LRRFVVRTMCAVLGLVARQEDSGLRDHSVRVLISNHVTPFDHNIVNLLTTCSTPLLNSPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SFVCWSRGFMEMNGRGELVESLKRFCASTRLPPTPLLLFPEEEATNGREGLLRFSSWPFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 SFVCWSRGFMEMNGRGELVESLKRFCASTRLPPTPLLLFPEEEATNGREGLLRFSSWPFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 IQDVVQPLTLQVQRPLVSVTVSDASWVSELLWSLFVPFTVYQVRWLRPVHRQLGEANEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 IQDVVQPLTLQVQRPLVSVTVSDASWVSELLWSLFVPFTVYQVRWLRPVHRQLGEANEEF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 ALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQSSFPPSPGPSPDVQLATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 ALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQSSFPPSPGPSPDVQLATL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 AQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLEGAVAFMPEDITKGTQSLPTASASKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 AQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLEGAVAFMPEDITKGTQSLPTASASKF
              310       320       330       340       350       360

              370       380       390       400       410
pF1KB0 PSSGPVTPQPTALTFAKSSWARQESLQERKQALYEYARRRFTERRAQEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 PSSGPVTPQPTALTFAKSSWARQESLQERKQALYEYARRRFTERRAQEAD
              370       380       390       400       410

>>XP_005264449 (OMIM: 602434) PREDICTED: ancient ubiquit  (467 aa)
 initn: 2322 init1: 2322 opt: 2325  Z-score: 2271.2  bits: 429.4 E(85289): 9.1e-120
Smith-Waterman score: 2325; 97.0% identity (97.8% similar) in 363 aa overlap (48-410:111-467)

        20        30        40        50        60        70       
pF1KB0 LPGDCFLLLVLLLYAPVGFCLLVLRLFLGIHVFLVSCALPDSVLRRFVVRTMCAVLGLVA
                                     :.  .:: .:     :::::::::::::::
XP_005 SWSAARCQTASFAGSDAGVRGVSELGLARGHTVTTSC-VP-----RFVVRTMCAVLGLVA
               90       100       110             120       130    

        80        90       100       110       120       130       
pF1KB0 RQEDSGLRDHSVRVLISNHVTPFDHNIVNLLTTCSTPLLNSPPSFVCWSRGFMEMNGRGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQEDSGLRDHSVRVLISNHVTPFDHNIVNLLTTCSTPLLNSPPSFVCWSRGFMEMNGRGE
          140       150       160       170       180       190    

       140       150       160       170       180       190       
pF1KB0 LVESLKRFCASTRLPPTPLLLFPEEEATNGREGLLRFSSWPFSIQDVVQPLTLQVQRPLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LVESLKRFCASTRLPPTPLLLFPEEEATNGREGLLRFSSWPFSIQDVVQPLTLQVQRPLV
          200       210       220       230       240       250    

       200       210       220       230       240       250       
pF1KB0 SVTVSDASWVSELLWSLFVPFTVYQVRWLRPVHRQLGEANEEFALRVQQLVAKELGQTGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVTVSDASWVSELLWSLFVPFTVYQVRWLRPVHRQLGEANEEFALRVQQLVAKELGQTGT
          260       270       280       290       300       310    

       260       270       280       290       300       310       
pF1KB0 RLTPADKAEHMKRQRHPRLRPQSAQSSFPPSPGPSPDVQLATLAQRVKEVLPHVPLGVIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RLTPADKAEHMKRQRHPRLRPQSAQSSFPPSPGPSPDVQLATLAQRVKEVLPHVPLGVIQ
          320       330       340       350       360       370    

       320       330       340       350       360       370       
pF1KB0 RDLAKTGCVDLTITNLLEGAVAFMPEDITKGTQSLPTASASKFPSSGPVTPQPTALTFAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RDLAKTGCVDLTITNLLEGAVAFMPEDITKGTQSLPTASASKFPSSGPVTPQPTALTFAK
          380       390       400       410       420       430    

       380       390       400       410
pF1KB0 SSWARQESLQERKQALYEYARRRFTERRAQEAD
       :::::::::::::::::::::::::::::::::
XP_005 SSWARQESLQERKQALYEYARRRFTERRAQEAD
          440       450       460       




410 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:49:24 2016 done: Sat Nov  5 16:49:25 2016
 Total Scan time: 10.140 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]