FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0435, 448 aa
  1>>>pF1KB0435 448 - 448 aa - 448 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5129+/-0.00077; mu= 17.8864+/- 0.047
 mean_var=98.4712+/-18.583, 0's: 0 Z-trim(111.5): 32  B-trim: 0 in 0/53
 Lambda= 0.129247
 statistics sampled from 12368 (12393) to 12368 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.381), width:  16
 Scan time:  2.910

The best scores are:                                      opt bits E(32554)
CCDS2081.1 EDAR gene_id:10913|Hs108|chr2           ( 448) 3055 579.9 1.8e-165


>>CCDS2081.1 EDAR gene_id:10913|Hs108|chr2                (448 aa)
 initn: 3055 init1: 3055 opt: 3055  Z-score: 3084.2  bits: 579.9 E(32554): 1.8e-165
Smith-Waterman score: 3055; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)

               10        20        30        40        50        60
pF1KB0 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTLSPFQHAHKELSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTLSPFQHAHKELSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAPACCTSHPGKSVEAQVSKDEEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 QGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAPACCTSHPGKSVEAQVSKDEEKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 EAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEPAPDKQGSPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 EAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEPAPDKQGSPEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 CLLSLVHLAREKSATSNKSAGIQSRRKKILDVYANVCGVVEGLSPTELPFDCLEKTSRML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 CLLSLVHLAREKSATSNKSAGIQSRRKKILDVYANVCGVVEGLSPTELPFDCLEKTSRML
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 SSTYNSEKAVVKTWRHLAESFGLKRDEIGGMTDGMQLFDRISTAGYSIPELLTKLVQIER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 SSTYNSEKAVVKTWRHLAESFGLKRDEIGGMTDGMQLFDRISTAGYSIPELLTKLVQIER
              370       380       390       400       410       420

              430       440        
pF1KB0 LDAVESLCADILEWAGVVPPASQPHAAS
       ::::::::::::::::::::::::::::
CCDS20 LDAVESLCADILEWAGVVPPASQPHAAS
              430       440        




448 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:51:24 2016 done: Sat Nov  5 16:51:25 2016
 Total Scan time:  2.910 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]