FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0437, 481 aa
  1>>>pF1KB0437 481 - 481 aa - 481 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0298+/-0.000866; mu= 14.6232+/- 0.052
 mean_var=78.1176+/-15.378, 0's: 0 Z-trim(107.6): 10  B-trim: 40 in 1/49
 Lambda= 0.145111
 statistics sampled from 9662 (9663) to 9662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.297), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS6611.1 POLR1E gene_id:64425|Hs108|chr9         ( 419) 2539 541.1 8.7e-154


>>CCDS6611.1 POLR1E gene_id:64425|Hs108|chr9              (419 aa)
 initn: 2535 init1: 2535 opt: 2539  Z-score: 2874.4  bits: 541.1 E(32554): 8.7e-154
Smith-Waterman score: 2539; 95.9% identity (97.1% similar) in 415 aa overlap (73-481:5-419)

             50        60        70        80              90      
pF1KB0 LGQDPSFLAIPILALPPSDSLVPPYIVWYIVWPSALISFLGC------TLTVQFSNGKLQ
                                     : :::  .. :       .. :::::::::
CCDS66                           MAAEVLPSARWQYCGAPDGSQRAVLVQFSNGKLQ
                                         10        20        30    

        100       110       120       130       140       150      
pF1KB0 SPGNMRFTLYENKDSTNPRKRNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SPGNMRFTLYENKDSTNPRKRNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNK
           40        50        60        70        80        90    

        160       170       180       190       200       210      
pF1KB0 TSGQMEVYDAELFNMQPLFSDVSVESELALESQTKTYREKMDSCIEAFGTTKQKRALNTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TSGQMEVYDAELFNMQPLFSDVSVESELALESQTKTYREKMDSCIEAFGTTKQKRALNTR
          100       110       120       130       140       150    

        220       230       240       250       260       270      
pF1KB0 RMNRVGNESLNRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAAKPEDVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RMNRVGNESLNRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAAKPEDVY
          160       170       180       190       200       210    

        280       290       300       310       320       330      
pF1KB0 KFEDLLSPAEYEALQSPSEAFRNVTSEEILKMIEENSHCTFVIEALKSLPSDVESRDRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KFEDLLSPAEYEALQSPSEAFRNVTSEEILKMIEENSHCTFVIEALKSLPSDVESRDRQA
          220       230       240       250       260       270    

        340       350       360       370       380       390      
pF1KB0 RCIWFLDTLIKFRAHRVVKRKSALGPGVPHIINTKLLKHFTCLTYNNGRLRNLISDSMKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RCIWFLDTLIKFRAHRVVKRKSALGPGVPHIINTKLLKHFTCLTYNNGRLRNLISDSMKA
          280       290       300       310       320       330    

        400       410       420       430       440       450      
pF1KB0 KITAYVIILALHIHDFQIDLTVLQRDLKLSEKRMMEIAKAMRLKISKRKVSVAAGSEEDH
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS66 KITAYVIILALHIHDFQIDLTVLQRDLKLSEKRMMEIAKAMRLKISKRRVSVAAGSEEDH
          340       350       360       370       380       390    

        460       470       480 
pF1KB0 KLGTLSLPLPPAQTSDRLAKRRKIT
       :::::::::::::::::::::::::
CCDS66 KLGTLSLPLPPAQTSDRLAKRRKIT
          400       410         




481 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:46:18 2016 done: Sat Nov  5 18:46:19 2016
 Total Scan time:  2.920 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]