Result of FASTA (ccds) for
pF1KB0452
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0452, 919 aa
1>>>pF1KB0452 919 - 919 aa - 919 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.0061+/-0.00109; mu= -1.9574+/- 0.066
mean_var=433.7384+/-88.953, 0's: 0 Z-trim(115.2): 146 B-trim: 0 in 0/54
Lambda= 0.061583
statistics sampled from 15603 (15748) to 15603 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.484), width: 16
Scan time: 5.390
The best scores are: opt bits E(32554)
CCDS14387.1 AR gene_id:367|Hs108|chrX ( 920) 6306 575.3 1.8e-163
CCDS43965.1 AR gene_id:367|Hs108|chrX ( 388) 2608 246.4 7.9e-65
CCDS8310.1 PGR gene_id:5241|Hs108|chr11 ( 933) 1519 150.0 1.9e-35
CCDS4278.1 NR3C1 gene_id:2908|Hs108|chr5 ( 777) 1335 133.6 1.4e-30
CCDS34258.1 NR3C1 gene_id:2908|Hs108|chr5 ( 778) 1330 133.2 1.9e-30
CCDS59229.1 PGR gene_id:5241|Hs108|chr11 ( 339) 1267 127.2 5.3e-29
CCDS47298.1 NR3C1 gene_id:2908|Hs108|chr5 ( 742) 1199 121.5 5.9e-27
CCDS3772.1 NR3C2 gene_id:4306|Hs108|chr4 ( 984) 872 92.6 4e-18
CCDS54811.1 NR3C2 gene_id:4306|Hs108|chr4 ( 867) 696 76.9 1.9e-13
>>CCDS14387.1 AR gene_id:367|Hs108|chrX (920 aa)
initn: 3346 init1: 3346 opt: 6306 Z-score: 3048.4 bits: 575.3 E(32554): 1.8e-163
Smith-Waterman score: 6306; 99.7% identity (99.7% similar) in 921 aa overlap (1-919:1-920)
10 20 30 40 50 60
pF1KB0 MEVQLGLGRVYPRPPSKTYRGAFQNLFQSVREVIQNPGPRHPEAASAAPPGASLLLLQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEVQLGLGRVYPRPPSKTYRGAFQNLFQSVREVIQNPGPRHPEAASAAPPGASLLLLQQQ
10 20 30 40 50 60
70 80 90 100 110
pF1KB0 QQQQQQQQQQQQQQQQQQ--ETSPRQQQQQQGEDGSPQAHRRGPTGYLVLDEEQQPSQPQ
:::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS14 QQQQQQQQQQQQQQQQQQQQETSPRQQQQQQGEDGSPQAHRRGPTGYLVLDEEQQPSQPQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 SALECHPERGCVPEPGAAVAASKGLPQQLPAPPDEDDSAAPSTLSLLGPTFPGLSSCSAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SALECHPERGCVPEPGAAVAASKGLPQQLPAPPDEDDSAAPSTLSLLGPTFPGLSSCSAD
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 LKDILSEASTMQLLQQQQQEAVSEGSSSGRAREASGAPTSSKDNYLGGTSTISDNAKELC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LKDILSEASTMQLLQQQQQEAVSEGSSSGRAREASGAPTSSKDNYLGGTSTISDNAKELC
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 KAVSVSMGLGVEALEHLSPGEQLRGDCMYAPLLGVPPAVRPTPCAPLAECKGSLLDDSAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KAVSVSMGLGVEALEHLSPGEQLRGDCMYAPLLGVPPAVRPTPCAPLAECKGSLLDDSAG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 KSTEDTAEYSPFKGGYTKGLEGESLGCSGSAAAGSSGTLELPSTLSLYKSGALDEAAAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KSTEDTAEYSPFKGGYTKGLEGESLGCSGSAAAGSSGTLELPSTLSLYKSGALDEAAAYQ
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB0 SRDYYNFPLALAGPPPPPPPPHPHARIKLENPLDYGSAWAAAAAQCRYGDLASLHGAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SRDYYNFPLALAGPPPPPPPPHPHARIKLENPLDYGSAWAAAAAQCRYGDLASLHGAGAA
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB0 GPGSGSPSAAASSSWHTLFTAEEGQLYGPCGGGGGGGGGGGGGGGGGGGGGGGGEAGAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS14 GPGSGSPSAAASSSWHTLFTAEEGQLYGPCGGGGGGGGGGGGGGGGGGGGGGG-EAGAVA
430 440 450 460 470
480 490 500 510 520 530
pF1KB0 PYGYTRPPQGLAGQESDFTAPDVWYPGGMVSRVPYPSPTCVKSEMGPWMDSYSGPYGDMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PYGYTRPPQGLAGQESDFTAPDVWYPGGMVSRVPYPSPTCVKSEMGPWMDSYSGPYGDMR
480 490 500 510 520 530
540 550 560 570 580 590
pF1KB0 LETARDHVLPIDYYFPPQKTCLICGDEASGCHYGALTCGSCKVFFKRAAEGKQKYLCASR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LETARDHVLPIDYYFPPQKTCLICGDEASGCHYGALTCGSCKVFFKRAAEGKQKYLCASR
540 550 560 570 580 590
600 610 620 630 640 650
pF1KB0 NDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLGNLKLQEEGEASSTTSPTEETTQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLGNLKLQEEGEASSTTSPTEETTQK
600 610 620 630 640 650
660 670 680 690 700 710
pF1KB0 LTVSHIEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LTVSHIEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKW
660 670 680 690 700 710
720 730 740 750 760 770
pF1KB0 AKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKS
720 730 740 750 760 770
780 790 800 810 820 830
pF1KB0 RMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKEL
780 790 800 810 820 830
840 850 860 870 880 890
pF1KB0 DRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEI
840 850 860 870 880 890
900 910
pF1KB0 ISVQVPKILSGKVKPIYFHTQ
:::::::::::::::::::::
CCDS14 ISVQVPKILSGKVKPIYFHTQ
900 910 920
>>CCDS43965.1 AR gene_id:367|Hs108|chrX (388 aa)
initn: 2608 init1: 2608 opt: 2608 Z-score: 1277.4 bits: 246.4 E(32554): 7.9e-65
Smith-Waterman score: 2608; 100.0% identity (100.0% similar) in 381 aa overlap (539-919:8-388)
510 520 530 540 550 560
pF1KB0 SRVPYPSPTCVKSEMGPWMDSYSGPYGDMRLETARDHVLPIDYYFPPQKTCLICGDEASG
::::::::::::::::::::::::::::::
CCDS43 MILWLHSLETARDHVLPIDYYFPPQKTCLICGDEASG
10 20 30
570 580 590 600 610 620
pF1KB0 CHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGA
40 50 60 70 80 90
630 640 650 660 670 680
pF1KB0 RKLKKLGNLKLQEEGEASSTTSPTEETTQKLTVSHIEGYECQPIFLNVLEAIEPGVVCAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RKLKKLGNLKLQEEGEASSTTSPTEETTQKLTVSHIEGYECQPIFLNVLEAIEPGVVCAG
100 110 120 130 140 150
690 700 710 720 730 740
pF1KB0 HDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFA
160 170 180 190 200 210
750 760 770 780 790 800
pF1KB0 MGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMK
220 230 240 250 260 270
810 820 830 840 850 860
pF1KB0 ALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQP
280 290 300 310 320 330
870 880 890 900 910
pF1KB0 IARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHTQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHTQ
340 350 360 370 380
>>CCDS8310.1 PGR gene_id:5241|Hs108|chr11 (933 aa)
initn: 1550 init1: 980 opt: 1519 Z-score: 749.8 bits: 150.0 E(32554): 1.9e-35
Smith-Waterman score: 1596; 35.8% identity (60.3% similar) in 950 aa overlap (42-919:46-933)
20 30 40 50 60
pF1KB0 PRPPSKTYRGAFQNLFQSVREVIQNPGPRHPEAASAAPPGASLLLLQQ--QQQQQQQQQQ
::. :: : . . ::. . : :. ....
CCDS83 GGPPSPEVGSPLLCRPAAGPFPGSQTSDTLPEV-SAIPISLDGLLFPRPCQGQDPSDEKT
20 30 40 50 60 70
70 80 90 100 110 120
pF1KB0 QQQQQQQQQETSPRQQQQQQGEDGSPQAHRRGPTGYL--VLDEEQQPSQPQSALECHPER
:.::. .. : . . . .: :: .. . .: : ::: :: : . .:
CCDS83 QDQQSLSDVEGAYSRAEATRGAGGSSSSPPEKDSGLLDSVLDTLLAPSGPG---QSQPS-
80 90 100 110 120 130
130 140 150 160 170 180
pF1KB0 GCVPEPGAAVAASKGL-PQQLPAPPDEDDSAAPSTLSLLGPTFP------GLSSCSADLK
: :. :..: : .:: :: :::.: .:.: . : :: .: .
CCDS83 ---P-PACEVTSSWCLFGPELP----EDPPAAPATQRVLSPLMSRSGCKVGDSSGTAAAH
140 150 160 170 180
190 200 210 220
pF1KB0 DILSE--ASTMQLL---------------QQQQQEAVSEGSSSGRAREASGAPT-SSKDN
.: . . . ::: . : :: .: : :..: ..:
CCDS83 KVLPRGLSPARQLLLPASESPHWSGAPVKPSPQAAAVEVEEEDGSESEESAGPLLKGKPR
190 200 210 220 230 240
230 240 250 260
pF1KB0 YLGGTSTISDNA---------------KELCKAVSVSMGLGVEALEHLSPGEQLRG----
:::... . : :: . . ..: :: ..::.. .
CCDS83 ALGGAAAGGGAAAVPPGAAAGGVALVPKEDSRFSAPRVAL-VEQDAPMAPGRSPLATTVM
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB0 DCMYAPLLGVPPAVRPTPCAPLAECKGSLLDDSAGKSTEDTAEYSPFKGGYTKGLEGESL
: ...:.: . :. . : : .. : .:: .. . : .. : :.
CCDS83 DFIHVPILPLNHALLAARTRQLLEDES--YDGGAGAASAFAPPRSSPCASSTPVAVGDFP
310 320 330 340 350
330 340 350 360 370
pF1KB0 GCSGSA-AAGSSGTLEL-----PSTLSLYKSGALDEAAAYQSRDYY---NFPLALAGPPP
:. : .. . : : .:.. . ::.: . :.: : :. :
CCDS83 DCAYPPDAEPKDDAYPLYSDFQPPALKIKEEEEGAEASARSPRSYLVAGANPAAFPDFPL
360 370 380 390 400 410
380 390 400 410 420 430
pF1KB0 PPPPPHPHARIKLENPLDYGSAWAAAAAQCRYGDLASLHGAGAAGPGSGSPSAAASSSWH
:::: : : :. : :. : .:.:.:.: :.:.::.
CCDS83 GPPPPLP--------P---------RATPSRPGEAAV-----TAAPASASVSSASSSGST
420 430 440 450
440 450 460 470 480
pF1KB0 T---LFTAE-----EGQLYGPCGGGGGGGGGGGGGGGGGGGGGGGGEAGAVAPYGYTRPP
:. :: .: . : . :..: : . ..... ::: :: : :
CCDS83 LECILYKAEGAPPQQGPFAPPPCKAPGASGCLLPRDGLPSTSASAAAAGA-APALY--PA
460 470 480 490 500 510
490 500 510 520 530 540
pF1KB0 QGLAGQESDFTAPDVWYPGGMVSR-VPYPSPTCVKSEMGPWMDSYSGPYGDMRLETARDH
:: : :.. : ...... .: : :... : .: .. ..
CCDS83 LGLNGL------PQLGYQAAVLKEGLPQVYP--------PYLN-----Y--LRPDSEASQ
520 530 540 550
550 560 570 580 590 600
pF1KB0 VLPIDYYFPPQKTCLICGDEASGCHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDK
.. ::: ::::::::::::::.::::::::::::: ::...::::.:::: .::
CCDS83 SPQYSFESLPQKICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRNDCIVDK
560 570 580 590 600 610
610 620 630 640 650
pF1KB0 FRRKNCPSCRLRKCYEAGMTLGARKLKKLGNLKLQEEGEASSTTSP------TEETTQKL
.::::::.:::::: .:::.::.::.::...... . .: . .: .. .:..
CCDS83 IRRKNCPACRLRKCCQAGMVLGGRKFKKFNKVRVVRALDAVALPQPVGVPNESQALSQRF
620 630 640 650 660 670
660 670 680 690 700 710
pF1KB0 TVSHIEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWA
: : . . : ..:.: .::: :. :::::..::. ..::.:::.::::::. ::::.
CCDS83 TFSPGQDIQLIPPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWS
680 690 700 710 720 730
720 730 740 750 760 770
pF1KB0 KALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSR
:.::::::::.:::...::::::.::::..::::. .:...::::::::..:: ::..:
CCDS83 KSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESS
740 750 760 770 780 790
780 790 800 810 820 830
pF1KB0 MYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELD
.:: :. : .. ::: ::.. .::::::.:::.. ::..::..: :.:.: .::.::
CCDS83 FYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELI
800 810 820 830 840 850
840 850 860 870 880 890
pF1KB0 RIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEII
. :. ..:. .: :.::::::::::... ....:: . .. .:.:. .::.:::::.:.:
CCDS83 KAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVI
860 870 880 890 900 910
900 910
pF1KB0 SVQVPKILSGKVKPIYFHTQ
..:.::::.: :::. :: .
CCDS83 AAQLPKILAGMVKPLLFHKK
920 930
>>CCDS4278.1 NR3C1 gene_id:2908|Hs108|chr5 (777 aa)
initn: 1352 init1: 751 opt: 1335 Z-score: 662.4 bits: 133.6 E(32554): 1.4e-30
Smith-Waterman score: 1338; 47.7% identity (73.4% similar) in 436 aa overlap (487-919:368-777)
460 470 480 490 500 510
pF1KB0 GGGGGGGGGGGGGGGGEAGAVAPYGYTRPPQGLAGQESDFTAPDVWYPGGMVSRVPYPSP
:: .:... . . .:: : : ::
CCDS42 TASLSQQQDQKPIFNVIPPIPVGSENWNRCQG-SGDDNLTSLGTLNFPGRTVFSNGYSSP
340 350 360 370 380 390
520 530 540 550 560 570
pF1KB0 TCVKSEMGPWMDSYSGPYGDMRLETARDHVLPIDYYFPPQKTCLICGDEASGCHYGALTC
. : : : : : .. :. :: : ::.:.:::::::::.:::
CCDS42 S-----MRP--DVSSPPSSSSTATTG-----------PPPKLCLVCSDEASGCHYGVLTC
400 410 420 430
580 590 600 610 620 630
pF1KB0 GSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLGN
::::::::::.::...::::.:::: :::.::::::.:: ::: .:::.: ::: ::
CCDS42 GSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKK---
440 450 460 470 480 490
640 650 660 670 680 690
pF1KB0 LKLQEEGEASSTTSPTEETTQK---LTVSHIEGYECQPIFLNVLEAIEPGVVCAGHDNNQ
:.. : ..::. ..::... :. . : ....::.::: :. ::.:..
CCDS42 -KIK--GIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVIEPEVLYAGYDSSV
500 510 520 530 540 550
700 710 720 730 740 750
pF1KB0 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS
::: ....:: :: ::.. .::::::.:::::::.::::...::::: ::.::.::::
CCDS42 PDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRS
560 570 580 590 600 610
760 770 780 790 800 810
pF1KB0 FTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLF
. . .. .: :::::..:: :: ::.:: .: ..:.:. ::.. .:.::::.:::.
CCDS42 YRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLL
620 630 640 650 660 670
820 830 840 850 860 870
pF1KB0 SIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIAREL
: .: ::::.:..:::.::.::::: . :. .. : .. .:::::::::::.. ....:
CCDS42 SSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENL
680 690 700 710 720 730
880 890 900 910
pF1KB0 HQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHTQ
.. :. .. . : :..::::.::::. :.:: .:..: . :: .
CCDS42 LNYCFQTFLDKTM-SIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK
740 750 760 770
>>CCDS34258.1 NR3C1 gene_id:2908|Hs108|chr5 (778 aa)
initn: 1151 init1: 751 opt: 1330 Z-score: 660.0 bits: 133.2 E(32554): 1.9e-30
Smith-Waterman score: 1333; 47.8% identity (73.2% similar) in 437 aa overlap (487-919:368-778)
460 470 480 490 500 510
pF1KB0 GGGGGGGGGGGGGGGGEAGAVAPYGYTRPPQGLAGQESDFTAPDVWYPGGMVSRVPYPSP
:: .:... . . .:: : : ::
CCDS34 TASLSQQQDQKPIFNVIPPIPVGSENWNRCQG-SGDDNLTSLGTLNFPGRTVFSNGYSSP
340 350 360 370 380 390
520 530 540 550 560 570
pF1KB0 TCVKSEMGPWMDSYSGPYGDMRLETARDHVLPIDYYFPPQKTCLICGDEASGCHYGALTC
. : : : : : .. :. :: : ::.:.:::::::::.:::
CCDS34 S-----MRP--DVSSPPSSSSTATTG-----------PPPKLCLVCSDEASGCHYGVLTC
400 410 420 430
580 590 600 610 620 630
pF1KB0 GSCKVFFKRAAEGKQK-YLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLG
::::::::::.::.:. ::::.:::: :::.::::::.:: ::: .:::.: ::: ::
CCDS34 GSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKK--
440 450 460 470 480 490
640 650 660 670 680 690
pF1KB0 NLKLQEEGEASSTTSPTEETTQK---LTVSHIEGYECQPIFLNVLEAIEPGVVCAGHDNN
:.. : ..::. ..::... :. . : ....::.::: :. ::.:..
CCDS34 --KIK--GIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVIEPEVLYAGYDSS
500 510 520 530 540 550
700 710 720 730 740 750
pF1KB0 QPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWR
::: ....:: :: ::.. .::::::.:::::::.::::...::::: ::.::.:::
CCDS34 VPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWR
560 570 580 590 600 610
760 770 780 790 800 810
pF1KB0 SFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL
:. . .. .: :::::..:: :: ::.:: .: ..:.:. ::.. .:.::::.:::
CCDS34 SYRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLL
620 630 640 650 660 670
820 830 840 850 860 870
pF1KB0 FSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARE
.: .: ::::.:..:::.::.::::: . :. .. : .. .:::::::::::.. ....
CCDS34 LSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVEN
680 690 700 710 720 730
880 890 900 910
pF1KB0 LHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHTQ
: .. :. .. . : :..::::.::::. :.:: .:..: . :: .
CCDS34 LLNYCFQTFLDKTM-SIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK
740 750 760 770
>>CCDS59229.1 PGR gene_id:5241|Hs108|chr11 (339 aa)
initn: 1232 init1: 980 opt: 1267 Z-score: 634.2 bits: 127.2 E(32554): 5.3e-29
Smith-Waterman score: 1267; 51.8% identity (83.4% similar) in 338 aa overlap (588-919:2-339)
560 570 580 590 600 610
pF1KB0 TCLICGDEASGCHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLR
::...::::.:::: .::.::::::.::::
CCDS59 MEGQHNYLCAGRNDCIVDKIRRKNCPACRLR
10 20 30
620 630 640 650 660 670
pF1KB0 KCYEAGMTLGARKLKKLGNLKLQEEGEASSTTSP------TEETTQKLTVSHIEGYECQP
:: .:::.::.::.::...... . .: . .: .. .:..: : . . :
CCDS59 KCCQAGMVLGGRKFKKFNKVRVVRALDAVALPQPVGVPNESQALSQRFTFSPGQDIQLIP
40 50 60 70 80 90
680 690 700 710 720 730
pF1KB0 IFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVD
..:.: .::: :. :::::..::. ..::.:::.::::::. ::::.:.::::::::.:
CCDS59 PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHID
100 110 120 130 140 150
740 750 760 770 780 790
pF1KB0 DQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLS
::...::::::.::::..::::. .:...::::::::..:: ::..: .:: :. : ..
CCDS59 DQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIP
160 170 180 190 200 210
800 810 820 830 840 850
pF1KB0 QEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTS
::: ::.. .::::::.:::.. ::..::..: :.:.: .::.:: . :. ..:. .:
CCDS59 QEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVS
220 230 240 250 260 270
860 870 880 890 900 910
pF1KB0 CSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKV
:.::::::::::... ....:: . .. .:.:. .::.:::::.:.:..:.::::.: :
CCDS59 SSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVIAAQLPKILAGMV
280 290 300 310 320 330
pF1KB0 KPIYFHTQ
::. :: .
CCDS59 KPLLFHKK
>>CCDS47298.1 NR3C1 gene_id:2908|Hs108|chr5 (742 aa)
initn: 1229 init1: 729 opt: 1199 Z-score: 597.4 bits: 121.5 E(32554): 5.9e-27
Smith-Waterman score: 1202; 49.2% identity (73.2% similar) in 384 aa overlap (487-867:368-726)
460 470 480 490 500 510
pF1KB0 GGGGGGGGGGGGGGGGEAGAVAPYGYTRPPQGLAGQESDFTAPDVWYPGGMVSRVPYPSP
:: .:... . . .:: : : ::
CCDS47 TASLSQQQDQKPIFNVIPPIPVGSENWNRCQG-SGDDNLTSLGTLNFPGRTVFSNGYSSP
340 350 360 370 380 390
520 530 540 550 560 570
pF1KB0 TCVKSEMGPWMDSYSGPYGDMRLETARDHVLPIDYYFPPQKTCLICGDEASGCHYGALTC
. : : : : : .. :. :: : ::.:.:::::::::.:::
CCDS47 S-----MRP--DVSSPPSSSSTATTG-----------PPPKLCLVCSDEASGCHYGVLTC
400 410 420 430
580 590 600 610 620 630
pF1KB0 GSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLGN
::::::::::.::...::::.:::: :::.::::::.:: ::: .:::.: ::: ::
CCDS47 GSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKK---
440 450 460 470 480 490
640 650 660 670 680 690
pF1KB0 LKLQEEGEASSTTSPTEETTQK---LTVSHIEGYECQPIFLNVLEAIEPGVVCAGHDNNQ
:.. : ..::. ..::... :. . : ....::.::: :. ::.:..
CCDS47 -KIK--GIQQATTGVSQETSENPGNKTIVPATLPQLTPTLVSLLEVIEPEVLYAGYDSSV
500 510 520 530 540 550
700 710 720 730 740 750
pF1KB0 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS
::: ....:: :: ::.. .::::::.:::::::.::::...::::: ::.::.::::
CCDS47 PDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRS
560 570 580 590 600 610
760 770 780 790 800 810
pF1KB0 FTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLF
. . .. .: :::::..:: :: ::.:: .: ..:.:. ::.. .:.::::.:::.
CCDS47 YRQSSANLLCFAPDLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLL
620 630 640 650 660 670
820 830 840 850 860 870
pF1KB0 SIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIAREL
: .: ::::.:..:::.::.::::: . :. .. : .. .:::::::::::..
CCDS47 SSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHENVMWL
680 690 700 710 720 730
880 890 900 910
pF1KB0 HQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHTQ
CCDS47 KPESTSHTLI
740
>>CCDS3772.1 NR3C2 gene_id:4306|Hs108|chr4 (984 aa)
initn: 1395 init1: 870 opt: 872 Z-score: 438.9 bits: 92.6 E(32554): 4e-18
Smith-Waterman score: 1328; 51.8% identity (76.9% similar) in 386 aa overlap (555-919:599-984)
530 540 550 560 570 580
pF1KB0 PWMDSYSGPYGDMRLETARDHVLPIDYYFPPQKTCLICGDEASGCHYGALTCGSCKVFFK
:.: ::.:::::::::::..::::::::::
CCDS37 RRSDGYPVLEYIPENVSSSTLRSVSTGSSRPSKICLVCGDEASGCHYGVVTCGSCKVFFK
570 580 590 600 610 620
590 600 610 620 630 640
pF1KB0 RAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLGNLK-LQEEG
::.::...::::.:::: :::.::::::.:::.:: .:::.::::: ::::.:: ..::
CCDS37 RAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMNLGARKSKKLGKLKGIHEEQ
630 640 650 660 670 680
650 660 670 680
pF1KB0 -----------------EASSTTSPTEE-TTQKLTVSHIE--GYECQPIFLNVLEAIEPG
:... .:..: ... : .. . : . ::: :::
CCDS37 PQQQQPPPPPPPPQSPEEGTTYIAPAKEPSVNTALVPQLSTISRALTPSPVMVLENIEPE
690 700 710 720 730 740
690 700 710 720 730 740
pF1KB0 VVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMG
.: ::.:...::. :::.::.:. .:...::::::.::::.:: ..::...::::::
CCDS37 IVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMC
750 760 770 780 790 800
750 760 770 780 790 800
pF1KB0 LMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQE
: ::..:::. ..::..::::::::::: .::.: :: : :...: .: ::.: .:
CCDS37 LSSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEE
810 820 830 840 850 860
810 820 830 840 850 860
pF1KB0 FLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLL
. ::.:::.: :: ::::.: :.:.: :::::: .... .: . .:::::::::
CCDS37 YTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLL
870 880 890 900 910 920
870 880 890 900 910
pF1KB0 DSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHTQ
::.. .. .: .: : . .:: ..:.:: :..:::: :.::. ::..::.::: .
CCDS37 DSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQLPKVESGNAKPLYFHRK
930 940 950 960 970 980
>>CCDS54811.1 NR3C2 gene_id:4306|Hs108|chr4 (867 aa)
initn: 1160 init1: 683 opt: 696 Z-score: 355.0 bits: 76.9 E(32554): 1.9e-13
Smith-Waterman score: 931; 43.0% identity (61.4% similar) in 365 aa overlap (555-919:599-867)
530 540 550 560 570 580
pF1KB0 PWMDSYSGPYGDMRLETARDHVLPIDYYFPPQKTCLICGDEASGCHYGALTCGSCKVFFK
:.: ::.:::::::::::..::::::::::
CCDS54 RRSDGYPVLEYIPENVSSSTLRSVSTGSSRPSKICLVCGDEASGCHYGVVTCGSCKVFFK
570 580 590 600 610 620
590 600 610 620 630 640
pF1KB0 RAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLGNLKLQEEGE
::.::...::::.:::: :::.::::::.:::.:: .:::.::
CCDS54 RAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMNLG-----------------
630 640 650 660 670
650 660 670 680 690 700
pF1KB0 ASSTTSPTEETTQKLTVSHIEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSL
CCDS54 ------------------------------------------------------------
710 720 730 740 750 760
pF1KB0 NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYF
::.:: ..::...:::::: : ::..:::. ..::..:::
CCDS54 -------------------GFKNLPLEDQITLIQYSWMCLSSFALSWRSYKHTNSQFLYF
680 690 700 710
770 780 790 800 810 820
pF1KB0 APDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQ
:::::::: .::.: :: : :...: .: ::.: .:. ::.:::.: :: ::::.:
CCDS54 APDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQ
720 730 740 750 760 770
830 840 850 860 870 880
pF1KB0 KFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKS
:.:.: :::::: .... .: . .:::::::::::.. .. .: .: : . .:
CCDS54 AAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRES
780 790 800 810 820 830
890 900 910
pF1KB0 HMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHTQ
: ..:.:: :..:::: :.::. ::..::.::: .
CCDS54 HALKVEFPAMLVEIISDQLPKVESGNAKPLYFHRK
840 850 860
919 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 20:34:14 2016 done: Sun Nov 6 20:34:15 2016
Total Scan time: 5.390 Total Display time: 0.200
Function used was FASTA [36.3.4 Apr, 2011]