FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0467, 514 aa
  1>>>pF1KB0467 514 - 514 aa - 514 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.2295+/-0.00161; mu= -17.0731+/- 0.094
 mean_var=556.6875+/-117.590, 0's: 0 Z-trim(109.5): 105  B-trim: 0 in 0/52
 Lambda= 0.054359
 statistics sampled from 10865 (10926) to 10865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.336), width:  16
 Scan time:  3.120

The best scores are:                                      opt bits E(32554)
CCDS11940.2 CFAP53 gene_id:220136|Hs108|chr18      ( 514) 3295 273.7 3.5e-73


>>CCDS11940.2 CFAP53 gene_id:220136|Hs108|chr18           (514 aa)
 initn: 3295 init1: 3295 opt: 3295  Z-score: 1427.3  bits: 273.7 E(32554): 3.5e-73
Smith-Waterman score: 3295; 99.8% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KB0 MYSQRFGTVQREVKGPTPKVVIVRSKPPKGQGAEHHLERIRRSHQKHNAILASIKSSERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MYSQRFGTVQREVKGPTPKVVIVRSKPPKGQGAEHHLERIRRSHQKHNAILASIKSSERD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 RLKAEWDQHNDCKILDSLVRARIKDAVQGFIINIEERRNKLRELLALEENEYFTEMQLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RLKAEWDQHNDCKILDSLVRARIKDAVQGFIINIEERRNKLRELLALEENEYFTEMQLKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 ETIEEKKDRMREKTKLLKEKNEKERQDFVAEKLDQQFRERCEELRVELLSIHQKKVCEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ETIEEKKDRMREKTKLLKEKNEKERQDFVAEKLDQQFRERCEELRVELLSIHQKKVCEER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 KAQIAFNEELSRQKLVEEQMFSKLWEEDRLAKEKREAQEARRQKELMENTRLGLNAQITS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KAQIAFNEELSRQKLVEEQMFSKLWEEDRLAKEKREAQEARRQKELMENTRLGLNAQITS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 IKAQRQATQLLKEEEARLVESNNAQIKHENEQDMLKKQKAKQETRTILQKALQKRIEHIQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
CCDS11 IKAQRQATQLLKEEEARLVESNNAQIKHENEQDMLKKQKAKQETRTILQKALQERIEHIQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 QEYRDEQDLNMKLVQRALQDLQEEADKKKQKREDMIREQKIYHKYLAQRREEEKAQEKEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QEYRDEQDLNMKLVQRALQDLQEEADKKKQKREDMIREQKIYHKYLAQRREEEKAQEKEF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 DRILEEDKAKKLAEKDKELRLEKEARRQLVDEVMCTRKLQVQEKLQREAKEQEERAMEQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DRILEEDKAKKLAEKDKELRLEKEARRQLVDEVMCTRKLQVQEKLQREAKEQEERAMEQK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 HINESLKELNCEEKENFARRQRLAQEYRKQLQMQIAYQQQSQEAEKEEKRREFEAGVAAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HINESLKELNCEEKENFARRQRLAQEYRKQLQMQIAYQQQSQEAEKEEKRREFEAGVAAN
              430       440       450       460       470       480

              490       500       510    
pF1KB0 KMCLDKVQEVLSTHQVLPQNIHPMRKACPSKLPP
       ::::::::::::::::::::::::::::::::::
CCDS11 KMCLDKVQEVLSTHQVLPQNIHPMRKACPSKLPP
              490       500       510    




514 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:00:59 2016 done: Sat Nov  5 17:01:00 2016
 Total Scan time:  3.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]