Result of FASTA (ccds) for
pF1KB0477
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0477, 518 aa
1>>>pF1KB0477 518 - 518 aa - 518 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3057+/-0.000809; mu= 13.6805+/- 0.049
mean_var=82.5650+/-16.188, 0's: 0 Z-trim(108.5): 18 B-trim: 0 in 0/52
Lambda= 0.141149
statistics sampled from 10243 (10251) to 10243 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.315), width: 16
Scan time: 2.530
The best scores are: opt bits E(32554)
CCDS33017.1 SARS2 gene_id:54938|Hs108|chr19 ( 518) 3480 718.4 4.9e-207
CCDS54265.1 SARS2 gene_id:54938|Hs108|chr19 ( 520) 3275 676.6 1.8e-194
CCDS795.1 SARS gene_id:6301|Hs108|chr1 ( 514) 590 129.9 7e-30
CCDS81356.1 SARS gene_id:6301|Hs108|chr1 ( 536) 497 110.9 3.6e-24
>>CCDS33017.1 SARS2 gene_id:54938|Hs108|chr19 (518 aa)
initn: 3480 init1: 3480 opt: 3480 Z-score: 3830.4 bits: 718.4 E(32554): 4.9e-207
Smith-Waterman score: 3480; 100.0% identity (100.0% similar) in 518 aa overlap (1-518:1-518)
10 20 30 40 50 60
pF1KB0 MAASMARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAREGYSALPQLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAASMARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAREGYSALPQLDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 LANQDSGEVQQDPKYQGLRARGREIRKELVHLYPREAQLEEQFYLQALKLPNQTHPDVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LANQDSGEVQQDPKYQGLRARGREIRKELVHLYPREAQLEEQFYLQALKLPNQTHPDVPV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 GDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALLQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALLQH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNLAGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNLAGTA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 EVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGVTGPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGVTGPG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 SASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPRLLIALLESNQQKDGSVLVPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPRLLIALLESNQQKDGSVLVPPA
430 440 450 460 470 480
490 500 510
pF1KB0 LQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS
::::::::::::::::::::::::::::::::::::::
CCDS33 LQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS
490 500 510
>>CCDS54265.1 SARS2 gene_id:54938|Hs108|chr19 (520 aa)
initn: 3300 init1: 2452 opt: 3275 Z-score: 3604.8 bits: 676.6 E(32554): 1.8e-194
Smith-Waterman score: 3275; 95.4% identity (96.2% similar) in 521 aa overlap (1-518:1-520)
10 20 30 40 50 60
pF1KB0 MAASMARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAREGYSALPQLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAASMARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAREGYSALPQLDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ERFCACPEEAAHALELRKGELRSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRAL
70 80 90 100 110 120
130 140 150 160 170
pF1KB0 LANQDSGEVQQ---DPKYQGLRARGREIRKELVHLYPREAQLEEQFYLQALKLPNQTHPD
::::::::::: :: .. . . : ::::::::::::::::::::::
CCDS54 LANQDSGEVQQVRLDPGAGSIFGPTFLPFPGQLSLLV-EAQLEEQFYLQALKLPNQTHPD
130 140 150 160 170
180 190 200 210 220 230
pF1KB0 VPVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VPVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGAL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 LQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNLA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 GTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKVEMFGVT
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB0 GPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFG
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB0 EVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPRLLIALLESNQQKDGSVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPRLLIALLESNQQKDGSVLV
420 430 440 450 460 470
480 490 500 510
pF1KB0 PPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS
:::::::::::::::::::::::::::::::::::::::::
CCDS54 PPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS
480 490 500 510 520
>>CCDS795.1 SARS gene_id:6301|Hs108|chr1 (514 aa)
initn: 433 init1: 287 opt: 590 Z-score: 649.9 bits: 129.9 E(32554): 7e-30
Smith-Waterman score: 596; 29.5% identity (66.4% similar) in 342 aa overlap (158-485:123-460)
130 140 150 160 170 180
pF1KB0 EVQQDPKYQGLRARGREIRKELVHLYPREAQLEEQFYLQALKLPNQTHPDVPVGDESQA-
.:: . . . .. : ::.::.... ..
CCDS79 DALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVD
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB0 -RVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNF
.: .. :: : . .:... .: .. .. . :.: :.:.:.:. ..:...:...
CCDS79 NKVERIWGDCTVR--KKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQY
160 170 180 190 200 210
250 260 270 280 290
pF1KB0 TFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNI--------DPARFKDLNLA
.. : ::. :. .: ..: :.. .. . . ..:.. : . . :
CCDS79 ALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDE-ELYKVIGKGSEKSDDNSYDEKYLI
220 230 240 250 260
300 310 320 330 340 350
pF1KB0 GTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNT-GQEPRGLYRVHHFTKVEMFGV
.:.: .:. :. . .:::.... :::.: :... :.. ::..:::.: :.:.:
CCDS79 ATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVY
270 280 290 300 310 320
360 370 380 390 400 410
pF1KB0 TGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRF
..: ..: ...::... :. ::. ...... . :. : .:.:.:::.:: : :
CCDS79 SSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAF
330 340 350 360 370 380
420 430 440 450 460 470
pF1KB0 GEVTSASNCTDFQSRRLHIMF-QTEA--GELQFAHTVNATACAVPRLLIALLESNQQKDG
:..: :::::.:.:::.: . ::. ...:.: .::: ::. : . :.::. : . :
CCDS79 RELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKG
390 400 410 420 430 440
480 490 500 510
pF1KB0 SVLVPPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS
. :: :. ..
CCDS79 -ITVPEKLKEFMPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQN
450 460 470 480 490 500
>>CCDS81356.1 SARS gene_id:6301|Hs108|chr1 (536 aa)
initn: 433 init1: 287 opt: 497 Z-score: 547.3 bits: 110.9 E(32554): 3.6e-24
Smith-Waterman score: 554; 28.3% identity (62.9% similar) in 364 aa overlap (158-485:123-482)
130 140 150 160 170 180
pF1KB0 EVQQDPKYQGLRARGREIRKELVHLYPREAQLEEQFYLQALKLPNQTHPDVPVGDESQA-
.:: . . . .. : ::.::.... ..
CCDS81 DALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVD
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB0 -RVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNF
.: .. :: : . .:... .: .. .. . :.: :.:.:.:. ..:...:...
CCDS81 NKVERIWGDCTVR--KKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQY
160 170 180 190 200 210
250 260 270 280 290
pF1KB0 TFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNI--------DPARFKDLNLA
.. : ::. :. .: ..: :.. .. . . ..:.. : . . :
CCDS81 ALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDE-ELYKVIGKGSEKSDDNSYDEKYLI
220 230 240 250 260
300 310 320 330 340 350
pF1KB0 GTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNT-GQEPRGLYRVHHFTKVEMFGV
.:.: .:. :. . .:::.... :::.: :... :.. ::..:::.: :.:.:
CCDS81 ATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVY
270 280 290 300 310 320
360 370 380 390 400 410
pF1KB0 TGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRF
..: ..: ...::... :. ::. ...... . :. : .:.:.:::.:: : :
CCDS81 SSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAF
330 340 350 360 370 380
420 430 440 450
pF1KB0 GEVTSASNCTDFQSRRLHIMF-QT-------------------EAG-----ELQFAHTVN
:..: :::::.:.:::.: . :: ::. ...:.: .:
CCDS81 RELVSCSNCTDYQARRLRIRYGQTKKMMDKRKNNLHLSTQNKLEASLFSPKKVEFVHMLN
390 400 410 420 430 440
460 470 480 490 500 510
pF1KB0 ATACAVPRLLIALLESNQQKDGSVLVPPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGL
:: ::. : . :.::. : . : . :: :. ..
CCDS81 ATMCATTRTICAILENYQTEKG-ITVPEKLKEFMPPGLQELIPFVKPAPIEQEPSKKQKK
450 460 470 480 490 500
pF1KB0 PGQPAVS
CCDS81 QHEGSKKKAAARDVTLENRLQNMEVTDA
510 520 530
518 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:04:55 2016 done: Sat Nov 5 17:04:55 2016
Total Scan time: 2.530 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]