Result of FASTA (ccds) for
pF1KB0487
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0487, 529 aa
1>>>pF1KB0487 529 - 529 aa - 529 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0734+/-0.00113; mu= 7.2587+/- 0.068
mean_var=191.5134+/-38.033, 0's: 0 Z-trim(107.6): 19 B-trim: 0 in 0/54
Lambda= 0.092678
statistics sampled from 9657 (9665) to 9657 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.297), width: 16
Scan time: 3.540
The best scores are: opt bits E(32554)
CCDS2353.1 NOP58 gene_id:51602|Hs108|chr2 ( 529) 3358 461.9 8.1e-130
CCDS13030.1 NOP56 gene_id:10528|Hs108|chr20 ( 594) 1130 164.1 4.2e-40
CCDS12879.1 PRPF31 gene_id:26121|Hs108|chr19 ( 499) 430 70.4 5.5e-12
>>CCDS2353.1 NOP58 gene_id:51602|Hs108|chr2 (529 aa)
initn: 3358 init1: 3358 opt: 3358 Z-score: 2444.1 bits: 461.9 E(32554): 8.1e-130
Smith-Waterman score: 3358; 100.0% identity (100.0% similar) in 529 aa overlap (1-529:1-529)
10 20 30 40 50 60
pF1KB0 MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPEKANKIVKLKHFEKFQDTAEALAAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPEKANKIVKLKHFEKFQDTAEALAAF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 TALMEGKINKQLKKVLKKIVKEAHEPLAVADAKLGGVIKEKLNLSCIHSPVVNELMRGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 TALMEGKINKQLKKVLKKIVKEAHEPLAVADAKLGGVIKEKLNLSCIHSPVVNELMRGIR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 SQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 SQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 MRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVEAEVKAAAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVEAEVKAAAEI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 SMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 SMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 HAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 HAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 MLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKISGTGKALAKTEKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKISGTGKALAKTEKYE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 HKSEVKTYDPSGDSTLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVKVEEEEEEKVAEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 HKSEVKTYDPSGDSTLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVKVEEEEEEKVAEEE
430 440 450 460 470 480
490 500 510 520
pF1KB0 ETSVKKKKKRGKKKHIKEEPLSEEEPCTSTAIASPEKKKKKKKKRENED
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ETSVKKKKKRGKKKHIKEEPLSEEEPCTSTAIASPEKKKKKKKKRENED
490 500 510 520
>>CCDS13030.1 NOP56 gene_id:10528|Hs108|chr20 (594 aa)
initn: 1146 init1: 553 opt: 1130 Z-score: 833.5 bits: 164.1 E(32554): 4.2e-40
Smith-Waterman score: 1147; 39.8% identity (66.6% similar) in 548 aa overlap (3-529:6-546)
10 20 30 40 50
pF1KB0 MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPE----KANKIVKLKHFEKFQDT
:::: .::::. : :...:.. : . : : ..::.: : : ..
CCDS13 MVLLHVLFEHAVGYAL---LALKEVEEISLLQPQVEESVLNLGKFHSIVRLVAFCPFASS
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 AEALAAFTALMEGKINKQLKKVLKKIV--KEAHEPLAVADAKLGGVIKEKLNLSCIHSPV
:: .:. :: ....:. .:. . :. . :.:.: :.:..:.:.:. .: . :
CCDS13 QVALENANAVSEGVVHEDLRLLLETHLPSKKKKVLLGVGDPKIGAAIQEELGYNCQTGGV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 VNELMRGIRSQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDD
. :..::.: .. .:. :. :::.:: :: ..::....::.::.:.:::::.
CCDS13 IAEILRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 LDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVE
:::..:.. :: :::::.::::: :::.:: :::. : .:.:.. :: .: ..
CCDS13 LDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEELTMD
180 190 200 210 220 230
240 250 260 270 280
pF1KB0 -AEVKA---AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVT
:..:: :.. ::: ..: :. :: . ..:. .:::: .:. ::...: .::...
CCDS13 GAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLS
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB0 VMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLV
...:: :::::::::::: ::::. ::::::::::::::::::.: .:::::::.:....
CCDS13 ALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFI
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB0 GQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGI-RKI
:... :.::.:::.:: : .: : : :.: .:..: . : ..: :: : : ::
CCDS13 GRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKN
360 370 380 390 400 410
410 420 430 440 450
pF1KB0 SGTGK--------ALAKTEKYEHKSEVKTYDPSGD--STLPTCSKKRKIEQVDKEDEITE
. : : :. . .:.: : ..: :.. . .. .:..:
CCDS13 LDVMKEAMVQAEEAAAEITRKLEKQEKKRLKKEKKRLAALALASSENSSSTPEECEEMSE
420 430 440 450 460 470
460 470 480 490 500 510
pF1KB0 KKAKKAKIKVKVEEEEEEKVAEEEETSVKKKKKRGKKKHIKEEPLSEEEPCTSTAIASPE
: :: : : . : .:. :. : .: :: ::. ::: .: . :. . . :.
CCDS13 KPKKKKKQKPQ--EVPQENGMEDPSISFSKPKK--KKSFSKEELMSSDLEETAGSTSIPK
480 490 500 510 520 530
520
pF1KB0 KKKKKKKKRENED
.::. :.. .:
CCDS13 RKKSTPKEETVNDPEEAGHRSGSKKKRKFSKEEPVSSGPEEAVGKSSSKKKKKFHKASQE
540 550 560 570 580 590
>>CCDS12879.1 PRPF31 gene_id:26121|Hs108|chr19 (499 aa)
initn: 405 init1: 327 opt: 430 Z-score: 328.7 bits: 70.4 E(32554): 5.5e-12
Smith-Waterman score: 440; 23.6% identity (61.2% similar) in 381 aa overlap (161-521:92-471)
140 150 160 170 180 190
pF1KB0 EPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYIMRCREWYGWH
.::.: .: ....::: :. :. .
CCDS12 EIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKR
70 80 90 100 110 120
200 210 220 230 240
pF1KB0 FPELGKIISDNLTYCKCLQKVGDR--KNYASAKLSELLPEEVEAEVKAAAEISMGTEVSE
:::: ... . : : . ....:. : . .:...: . . :...: ..: ..::
CCDS12 FPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSE
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB0 EDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNL
:.. . . : ...:.. . ..:::...:: ::::.....: ..:.... ::.: ::
CCDS12 EELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNL
190 200 210 220 230 240
310 320 330 340 350 360
pF1KB0 AKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVL
.: : ....:::.. . ...: :. : :::...: . : . : .:..::: .:
CCDS12 SKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTL
250 260 270 280 290 300
370 380 390 400 410 420
pF1KB0 AIRYDAFGEDSSSAMGVENRAKLEARL-RTLEDRGIRKISGTGKAL-AKTEKYEHKSEVK
: : :.: :.. . .: : . ..: .. . : ..... : .. .: . :
CCDS12 AARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRK
310 320 330 340 350 360
430 440 450 460 470
pF1KB0 TYDPSGDSTLPTCSKKRKIEQVDKEDEITEK---------KAKKAKIK-VKVEEEEEEKV
. : . . ... .. ... :: : :. ..... ..:.: . ..
CCDS12 MKERLGLTEIRKQANRMSFGEIE-EDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARI
370 380 390 400 410 420
480 490 500 510 520
pF1KB0 AEEEETSVKKKKK-RGKKKHIKEEPLSEEE-----PCTSTAIASPEKKKKKKKKRENED
.. . ...:.. : :. :... . : . :..:. .::
CCDS12 SKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYF
430 440 450 460 470 480
CCDS12 SSMAEFLKVKGEKSGLMST
490
529 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:04:07 2016 done: Sat Nov 5 08:04:07 2016
Total Scan time: 3.540 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]