Result of FASTA (omim) for
pF1KB0901
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0901, 80 aa
1>>>pF1KB0901 80 - 80 aa - 80 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3828+/-0.000224; mu= 13.7925+/- 0.014
mean_var=55.7161+/-11.183, 0's: 0 Z-trim(123.9): 32 B-trim: 1966 in 1/52
Lambda= 0.171824
statistics sampled from 44559 (44598) to 44559 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.523), width: 16
Scan time: 4.330
The best scores are: opt bits E(85289)
NP_071289 (OMIM: 606684) FXYD domain-containing io ( 80) 531 137.9 1.7e-33
NP_001265646 (OMIM: 602359) phospholemman precurso ( 92) 176 49.9 5.9e-07
NP_005022 (OMIM: 602359) phospholemman precursor [ ( 92) 176 49.9 5.9e-07
XP_016882363 (OMIM: 602359) PREDICTED: phospholemm ( 92) 176 49.9 5.9e-07
NP_001265647 (OMIM: 602359) phospholemman precurso ( 92) 176 49.9 5.9e-07
NP_068702 (OMIM: 602359) phospholemman precursor [ ( 92) 176 49.9 5.9e-07
XP_016882364 (OMIM: 602359) PREDICTED: phospholemm ( 110) 176 50.0 6.8e-07
XP_016882365 (OMIM: 602359) PREDICTED: phospholemm ( 110) 176 50.0 6.8e-07
NP_071286 (OMIM: 606683) FXYD domain-containing io ( 95) 145 42.2 0.00013
NP_001158308 (OMIM: 606683) FXYD domain-containing ( 95) 145 42.2 0.00013
NP_001158304 (OMIM: 606683) FXYD domain-containing ( 95) 145 42.2 0.00013
NP_001158303 (OMIM: 606683) FXYD domain-containing ( 95) 145 42.2 0.00013
NP_001158309 (OMIM: 606683) FXYD domain-containing ( 95) 145 42.2 0.00013
NP_067614 (OMIM: 154020,601814) sodium/potassium-t ( 64) 140 40.9 0.00022
NP_001671 (OMIM: 154020,601814) sodium/potassium-t ( 66) 140 40.9 0.00022
XP_016882366 (OMIM: 604996) PREDICTED: FXYD domain ( 87) 135 39.7 0.00065
XP_016882367 (OMIM: 604996) PREDICTED: FXYD domain ( 87) 135 39.7 0.00065
NP_005962 (OMIM: 604996) FXYD domain-containing io ( 87) 135 39.7 0.00065
NP_001129483 (OMIM: 604996) FXYD domain-containing ( 87) 135 39.7 0.00065
NP_001129479 (OMIM: 604996) FXYD domain-containing ( 144) 135 39.9 0.00095
NP_001171892 (OMIM: 616926) FXYD domain-containing ( 89) 128 38.0 0.0022
NP_775183 (OMIM: 616926) FXYD domain-containing io ( 89) 128 38.0 0.0022
NP_001307842 (OMIM: 606669) FXYD domain-containing ( 147) 129 38.4 0.0027
NP_054883 (OMIM: 606669) FXYD domain-containing io ( 178) 129 38.5 0.0031
NP_001158077 (OMIM: 606669) FXYD domain-containing ( 178) 129 38.5 0.0031
NP_659003 (OMIM: 606669) FXYD domain-containing io ( 178) 129 38.5 0.0031
>>NP_071289 (OMIM: 606684) FXYD domain-containing ion tr (80 aa)
initn: 531 init1: 531 opt: 531 Z-score: 722.2 bits: 137.9 E(85289): 1.7e-33
Smith-Waterman score: 531; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80)
10 20 30 40 50 60
pF1KB0 MATPTQTPTKAPEEPDPFYYDYNTVQTVGMTLATILFLLGILIVISKKVKCRKADSRSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MATPTQTPTKAPEEPDPFYYDYNTVQTVGMTLATILFLLGILIVISKKVKCRKADSRSES
10 20 30 40 50 60
70 80
pF1KB0 PTCKSCKSELPSSAPGGGGV
::::::::::::::::::::
NP_071 PTCKSCKSELPSSAPGGGGV
70 80
>>NP_001265646 (OMIM: 602359) phospholemman precursor [H (92 aa)
initn: 153 init1: 153 opt: 176 Z-score: 245.8 bits: 49.9 E(85289): 5.9e-07
Smith-Waterman score: 176; 43.1% identity (81.0% similar) in 58 aa overlap (5-61:16-73)
10 20 30 40
pF1KB0 MATPTQTPTKAPEEPDPFYYDYNTVQTVGMTLATILFLLGILIVISKKV
:.. ...:.: ::: :::...: :...: :::.::::::.:..
NP_001 MASLGHILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRC
10 20 30 40 50 60
50 60 70 80
pF1KB0 KCR-KADSRSESPTCKSCKSELPSSAPGGGGV
.:. . ..:. :
NP_001 RCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR
70 80 90
>>NP_005022 (OMIM: 602359) phospholemman precursor [Homo (92 aa)
initn: 153 init1: 153 opt: 176 Z-score: 245.8 bits: 49.9 E(85289): 5.9e-07
Smith-Waterman score: 176; 43.1% identity (81.0% similar) in 58 aa overlap (5-61:16-73)
10 20 30 40
pF1KB0 MATPTQTPTKAPEEPDPFYYDYNTVQTVGMTLATILFLLGILIVISKKV
:.. ...:.: ::: :::...: :...: :::.::::::.:..
NP_005 MASLGHILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRC
10 20 30 40 50 60
50 60 70 80
pF1KB0 KCR-KADSRSESPTCKSCKSELPSSAPGGGGV
.:. . ..:. :
NP_005 RCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR
70 80 90
>>XP_016882363 (OMIM: 602359) PREDICTED: phospholemman i (92 aa)
initn: 153 init1: 153 opt: 176 Z-score: 245.8 bits: 49.9 E(85289): 5.9e-07
Smith-Waterman score: 176; 43.1% identity (81.0% similar) in 58 aa overlap (5-61:16-73)
10 20 30 40
pF1KB0 MATPTQTPTKAPEEPDPFYYDYNTVQTVGMTLATILFLLGILIVISKKV
:.. ...:.: ::: :::...: :...: :::.::::::.:..
XP_016 MASLGHILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRC
10 20 30 40 50 60
50 60 70 80
pF1KB0 KCR-KADSRSESPTCKSCKSELPSSAPGGGGV
.:. . ..:. :
XP_016 RCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR
70 80 90
>>NP_001265647 (OMIM: 602359) phospholemman precursor [H (92 aa)
initn: 153 init1: 153 opt: 176 Z-score: 245.8 bits: 49.9 E(85289): 5.9e-07
Smith-Waterman score: 176; 43.1% identity (81.0% similar) in 58 aa overlap (5-61:16-73)
10 20 30 40
pF1KB0 MATPTQTPTKAPEEPDPFYYDYNTVQTVGMTLATILFLLGILIVISKKV
:.. ...:.: ::: :::...: :...: :::.::::::.:..
NP_001 MASLGHILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRC
10 20 30 40 50 60
50 60 70 80
pF1KB0 KCR-KADSRSESPTCKSCKSELPSSAPGGGGV
.:. . ..:. :
NP_001 RCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR
70 80 90
>>NP_068702 (OMIM: 602359) phospholemman precursor [Homo (92 aa)
initn: 153 init1: 153 opt: 176 Z-score: 245.8 bits: 49.9 E(85289): 5.9e-07
Smith-Waterman score: 176; 43.1% identity (81.0% similar) in 58 aa overlap (5-61:16-73)
10 20 30 40
pF1KB0 MATPTQTPTKAPEEPDPFYYDYNTVQTVGMTLATILFLLGILIVISKKV
:.. ...:.: ::: :::...: :...: :::.::::::.:..
NP_068 MASLGHILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRC
10 20 30 40 50 60
50 60 70 80
pF1KB0 KCR-KADSRSESPTCKSCKSELPSSAPGGGGV
.:. . ..:. :
NP_068 RCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR
70 80 90
>>XP_016882364 (OMIM: 602359) PREDICTED: phospholemman i (110 aa)
initn: 153 init1: 153 opt: 176 Z-score: 244.8 bits: 50.0 E(85289): 6.8e-07
Smith-Waterman score: 176; 43.1% identity (81.0% similar) in 58 aa overlap (5-61:34-91)
10 20 30
pF1KB0 MATPTQTPTKAPEEPDPFYYDYNTVQTVGMTLAT
:.. ...:.: ::: :::...: :...:
XP_016 SKGTHCLIRGVPPRTMASLGHILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAG
10 20 30 40 50 60
40 50 60 70 80
pF1KB0 ILFLLGILIVISKKVKCR-KADSRSESPTCKSCKSELPSSAPGGGGV
:::.::::::.:.. .:. . ..:. :
XP_016 ILFILGILIVLSRRCRCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR
70 80 90 100 110
>>XP_016882365 (OMIM: 602359) PREDICTED: phospholemman i (110 aa)
initn: 153 init1: 153 opt: 176 Z-score: 244.8 bits: 50.0 E(85289): 6.8e-07
Smith-Waterman score: 176; 43.1% identity (81.0% similar) in 58 aa overlap (5-61:34-91)
10 20 30
pF1KB0 MATPTQTPTKAPEEPDPFYYDYNTVQTVGMTLAT
:.. ...:.: ::: :::...: :...:
XP_016 SKGTHCLIRGVPPRTMASLGHILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAG
10 20 30 40 50 60
40 50 60 70 80
pF1KB0 ILFLLGILIVISKKVKCR-KADSRSESPTCKSCKSELPSSAPGGGGV
:::.::::::.:.. .:. . ..:. :
XP_016 ILFILGILIVLSRRCRCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR
70 80 90 100 110
>>NP_071286 (OMIM: 606683) FXYD domain-containing ion tr (95 aa)
initn: 154 init1: 145 opt: 145 Z-score: 204.1 bits: 42.2 E(85289): 0.00013
Smith-Waterman score: 145; 46.2% identity (87.2% similar) in 39 aa overlap (13-51:25-63)
10 20 30 40
pF1KB0 MATPTQTPTKAPEEPDPFYYDYNTVQTVGMTLATILFLLGILIVISKK
.: :::.:::.:.. :...:..:: .:::...:..
NP_071 MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
10 20 30 40 50 60
50 60 70 80
pF1KB0 VKCRKADSRSESPTCKSCKSELPSSAPGGGGV
::
NP_071 CKCSFNQKPRAPGDEEAQVENLITANATEPQKAEN
70 80 90
>>NP_001158308 (OMIM: 606683) FXYD domain-containing ion (95 aa)
initn: 154 init1: 145 opt: 145 Z-score: 204.1 bits: 42.2 E(85289): 0.00013
Smith-Waterman score: 145; 46.2% identity (87.2% similar) in 39 aa overlap (13-51:25-63)
10 20 30 40
pF1KB0 MATPTQTPTKAPEEPDPFYYDYNTVQTVGMTLATILFLLGILIVISKK
.: :::.:::.:.. :...:..:: .:::...:..
NP_001 MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
10 20 30 40 50 60
50 60 70 80
pF1KB0 VKCRKADSRSESPTCKSCKSELPSSAPGGGGV
::
NP_001 CKCSFNQKPRAPGDEEAQVENLITANATEPQKAEN
70 80 90
80 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:54:26 2016 done: Sat Nov 5 17:54:27 2016
Total Scan time: 4.330 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]