Result of FASTA (ccds) for
pF1KB0902
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0902, 297 aa
1>>>pF1KB0902 297 - 297 aa - 297 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1354+/-0.000784; mu= 8.9107+/- 0.048
mean_var=158.6312+/-32.600, 0's: 0 Z-trim(114.8): 85 B-trim: 629 in 1/49
Lambda= 0.101831
statistics sampled from 15245 (15342) to 15245 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.471), width: 16
Scan time: 2.920
The best scores are: opt bits E(32554)
CCDS4467.1 TRIM52 gene_id:84851|Hs108|chr5 ( 297) 2091 318.3 4.5e-87
CCDS4465.1 TRIM41 gene_id:90933|Hs108|chr5 ( 518) 1179 184.5 1.4e-46
CCDS4466.1 TRIM41 gene_id:90933|Hs108|chr5 ( 630) 1179 184.6 1.7e-46
>>CCDS4467.1 TRIM52 gene_id:84851|Hs108|chr5 (297 aa)
initn: 2091 init1: 2091 opt: 2091 Z-score: 1676.7 bits: 318.3 E(32554): 4.5e-87
Smith-Waterman score: 2091; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB0 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNEEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 DEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDNVDYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDNVDYM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 WDEEEEEEEEDQDYYLGGLRPDLRIDVYREEEILEAYDEDEDEELYPDIHPPPSLPLPGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WDEEEEEEEEDQDYYLGGLRPDLRIDVYREEEILEAYDEDEDEELYPDIHPPPSLPLPGQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFCEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFCEV
190 200 210 220 230 240
250 260 270 280 290
pF1KB0 DKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSKAYNQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSKAYNQ
250 260 270 280 290
>>CCDS4465.1 TRIM41 gene_id:90933|Hs108|chr5 (518 aa)
initn: 1266 init1: 954 opt: 1179 Z-score: 949.5 bits: 184.5 E(32554): 1.4e-46
Smith-Waterman score: 1179; 65.1% identity (80.2% similar) in 278 aa overlap (1-271:1-271)
10 20 30 40 50
pF1KB0 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNE--
::. : ::.:.:::::::::::::::: :::::.::::::: ::::::. :::::..:
CCDS44 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 --EEDEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDN
::.: :::. ::::: ::: .:. :.:. .::. ..... .: . . ..:::
CCDS44 REEEEEDGEEEEVEAVGAGAGWDTPMRDEDYEGDMEEEV-EEEEEGVFWTSGMSRSSWDN
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 VDYMWDEEEEEEEEDQDYYLGGLRP-DLRI-DVYREEEILEAYDEDEDEELYPDIHPPPS
.::.: :::.:::: ::::: .. ::: : :::.:: : :.:.: : . : :
CCDS44 MDYVW--EEEDEEEDLDYYLGDMEEEDLRGEDEEDEEEVLE---EVEEEDLDP-VTPLPP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 LPLPGQ-FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEA
: : . :::::::::: :::::::::::::::.:::: ::: ::.: .:::.: :::::
CCDS44 PPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQEA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 LKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSK
::::::::.::::::::::::::::::.:::::::::.
CCDS44 LKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEPLRKHLEAVQKMKA
240 250 260 270 280 290
pF1KB0 AYNQ
CCDS44 KEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASRL
300 310 320 330 340 350
>>CCDS4466.1 TRIM41 gene_id:90933|Hs108|chr5 (630 aa)
initn: 1266 init1: 954 opt: 1179 Z-score: 948.4 bits: 184.6 E(32554): 1.7e-46
Smith-Waterman score: 1179; 65.1% identity (80.2% similar) in 278 aa overlap (1-271:1-271)
10 20 30 40 50
pF1KB0 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNE--
::. : ::.:.:::::::::::::::: :::::.::::::: ::::::. :::::..:
CCDS44 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 --EEDEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDN
::.: :::. ::::: ::: .:. :.:. .::. ..... .: . . ..:::
CCDS44 REEEEEDGEEEEVEAVGAGAGWDTPMRDEDYEGDMEEEV-EEEEEGVFWTSGMSRSSWDN
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 VDYMWDEEEEEEEEDQDYYLGGLRP-DLRI-DVYREEEILEAYDEDEDEELYPDIHPPPS
.::.: :::.:::: ::::: .. ::: : :::.:: : :.:.: : . : :
CCDS44 MDYVW--EEEDEEEDLDYYLGDMEEEDLRGEDEEDEEEVLE---EVEEEDLDP-VTPLPP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 LPLPGQ-FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEA
: : . :::::::::: :::::::::::::::.:::: ::: ::.: .:::.: :::::
CCDS44 PPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQEA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 LKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSK
::::::::.::::::::::::::::::.:::::::::.
CCDS44 LKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEPLRKHLEAVQKMKA
240 250 260 270 280 290
pF1KB0 AYNQ
CCDS44 KEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASRL
300 310 320 330 340 350
297 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:06:08 2016 done: Sat Nov 5 17:06:08 2016
Total Scan time: 2.920 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]