Result of FASTA (omim) for
pF1KB0902
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0902, 297 aa
1>>>pF1KB0902 297 - 297 aa - 297 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5824+/-0.000317; mu= 12.1412+/- 0.020
mean_var=177.8565+/-36.065, 0's: 0 Z-trim(122.4): 112 B-trim: 1907 in 1/52
Lambda= 0.096170
statistics sampled from 40256 (40392) to 40256 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.474), width: 16
Scan time: 7.170
The best scores are: opt bits E(85289)
NP_963921 (OMIM: 610530) E3 ubiquitin-protein liga ( 518) 1179 175.3 2.2e-43
XP_006714995 (OMIM: 610530) PREDICTED: E3 ubiquiti ( 520) 1179 175.3 2.2e-43
XP_006714994 (OMIM: 610530) PREDICTED: E3 ubiquiti ( 525) 1179 175.3 2.2e-43
XP_006714993 (OMIM: 610530) PREDICTED: E3 ubiquiti ( 541) 1179 175.4 2.2e-43
XP_006714992 (OMIM: 610530) PREDICTED: E3 ubiquiti ( 543) 1179 175.4 2.2e-43
NP_291027 (OMIM: 610530) E3 ubiquitin-protein liga ( 630) 1179 175.4 2.5e-43
NP_006501 (OMIM: 602165) zinc finger protein RFP [ ( 513) 332 57.8 5.2e-08
NP_003132 (OMIM: 109092) E3 ubiquitin-protein liga ( 475) 310 54.7 4.1e-07
XP_016856908 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 262) 284 50.8 3.4e-06
XP_016856907 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 262) 284 50.8 3.4e-06
NP_001128327 (OMIM: 606123) E3 ubiquitin-protein l ( 343) 284 50.9 4e-06
XP_011542513 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 450) 284 51.1 4.8e-06
XP_006711842 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 477) 284 51.1 5e-06
XP_011542512 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 477) 284 51.1 5e-06
XP_011542511 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 477) 284 51.1 5e-06
NP_057186 (OMIM: 606123) E3 ubiquitin-protein liga ( 477) 284 51.1 5e-06
NP_001020111 (OMIM: 606123) E3 ubiquitin-protein l ( 477) 284 51.1 5e-06
XP_016873952 (OMIM: 608487) PREDICTED: tripartite ( 265) 264 48.0 2.3e-05
XP_006718421 (OMIM: 608487) PREDICTED: tripartite ( 265) 264 48.0 2.3e-05
XP_011518729 (OMIM: 608487) PREDICTED: tripartite ( 271) 264 48.0 2.4e-05
XP_016873951 (OMIM: 608487) PREDICTED: tripartite ( 300) 264 48.1 2.5e-05
XP_016873950 (OMIM: 608487) PREDICTED: tripartite ( 310) 264 48.1 2.6e-05
XP_011518728 (OMIM: 608487) PREDICTED: tripartite ( 310) 264 48.1 2.6e-05
XP_016873949 (OMIM: 608487) PREDICTED: tripartite ( 314) 264 48.1 2.6e-05
NP_149084 (OMIM: 608487) tripartite motif-containi ( 326) 264 48.1 2.7e-05
XP_005253241 (OMIM: 608487) PREDICTED: tripartite ( 326) 264 48.1 2.7e-05
NP_149083 (OMIM: 608487) tripartite motif-containi ( 347) 264 48.2 2.8e-05
NP_477514 (OMIM: 607564) tripartite motif-containi ( 488) 264 48.3 3.5e-05
XP_005253240 (OMIM: 608487) PREDICTED: tripartite ( 493) 264 48.4 3.5e-05
NP_149023 (OMIM: 608487) tripartite motif-containi ( 493) 264 48.4 3.5e-05
NP_001003818 (OMIM: 607564) tripartite motif-conta ( 516) 264 48.4 3.6e-05
XP_011512527 (OMIM: 605701) PREDICTED: tripartite ( 413) 241 45.1 0.00028
XP_011512525 (OMIM: 605701) PREDICTED: tripartite ( 499) 241 45.2 0.00032
XP_011512524 (OMIM: 605701) PREDICTED: tripartite ( 499) 241 45.2 0.00032
XP_011512523 (OMIM: 605701) PREDICTED: tripartite ( 499) 241 45.2 0.00032
NP_001291424 (OMIM: 617007) tripartite motif-conta ( 266) 210 40.5 0.0042
XP_011542587 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 391) 212 41.0 0.0045
XP_005273509 (OMIM: 617007) PREDICTED: tripartite ( 298) 210 40.6 0.0046
XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 212 41.1 0.005
NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 212 41.1 0.005
XP_016873516 (OMIM: 606124) PREDICTED: tripartite ( 375) 209 40.6 0.0058
NP_741983 (OMIM: 617007) tripartite motif-containi ( 493) 210 40.9 0.0063
NP_065091 (OMIM: 606124) tripartite motif-containi ( 452) 209 40.7 0.0065
NP_742013 (OMIM: 605700) E3 ubiquitin-protein liga ( 488) 209 40.7 0.0068
NP_067076 (OMIM: 605700) E3 ubiquitin-protein liga ( 518) 209 40.7 0.0071
>>NP_963921 (OMIM: 610530) E3 ubiquitin-protein ligase T (518 aa)
initn: 1266 init1: 954 opt: 1179 Z-score: 899.9 bits: 175.3 E(85289): 2.2e-43
Smith-Waterman score: 1179; 65.1% identity (80.2% similar) in 278 aa overlap (1-271:1-271)
10 20 30 40 50
pF1KB0 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNE--
::. : ::.:.:::::::::::::::: :::::.::::::: ::::::. :::::..:
NP_963 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 --EEDEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDN
::.: :::. ::::: ::: .:. :.:. .::. ..... .: . . ..:::
NP_963 REEEEEDGEEEEVEAVGAGAGWDTPMRDEDYEGDMEEEV-EEEEEGVFWTSGMSRSSWDN
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 VDYMWDEEEEEEEEDQDYYLGGLRP-DLRI-DVYREEEILEAYDEDEDEELYPDIHPPPS
.::.: :::.:::: ::::: .. ::: : :::.:: : :.:.: : . : :
NP_963 MDYVW--EEEDEEEDLDYYLGDMEEEDLRGEDEEDEEEVLE---EVEEEDLDP-VTPLPP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 LPLPGQ-FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEA
: : . :::::::::: :::::::::::::::.:::: ::: ::.: .:::.: :::::
NP_963 PPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQEA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 LKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSK
::::::::.::::::::::::::::::.:::::::::.
NP_963 LKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEPLRKHLEAVQKMKA
240 250 260 270 280 290
pF1KB0 AYNQ
NP_963 KEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASRL
300 310 320 330 340 350
>>XP_006714995 (OMIM: 610530) PREDICTED: E3 ubiquitin-pr (520 aa)
initn: 1266 init1: 954 opt: 1179 Z-score: 899.9 bits: 175.3 E(85289): 2.2e-43
Smith-Waterman score: 1179; 65.1% identity (80.2% similar) in 278 aa overlap (1-271:1-271)
10 20 30 40 50
pF1KB0 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNE--
::. : ::.:.:::::::::::::::: :::::.::::::: ::::::. :::::..:
XP_006 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 --EEDEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDN
::.: :::. ::::: ::: .:. :.:. .::. ..... .: . . ..:::
XP_006 REEEEEDGEEEEVEAVGAGAGWDTPMRDEDYEGDMEEEV-EEEEEGVFWTSGMSRSSWDN
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 VDYMWDEEEEEEEEDQDYYLGGLRP-DLRI-DVYREEEILEAYDEDEDEELYPDIHPPPS
.::.: :::.:::: ::::: .. ::: : :::.:: : :.:.: : . : :
XP_006 MDYVW--EEEDEEEDLDYYLGDMEEEDLRGEDEEDEEEVLE---EVEEEDLDP-VTPLPP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 LPLPGQ-FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEA
: : . :::::::::: :::::::::::::::.:::: ::: ::.: .:::.: :::::
XP_006 PPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQEA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 LKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSK
::::::::.::::::::::::::::::.:::::::::.
XP_006 LKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEPLRKHLEAVQKMKA
240 250 260 270 280 290
pF1KB0 AYNQ
XP_006 KEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASRL
300 310 320 330 340 350
>>XP_006714994 (OMIM: 610530) PREDICTED: E3 ubiquitin-pr (525 aa)
initn: 1266 init1: 954 opt: 1179 Z-score: 899.9 bits: 175.3 E(85289): 2.2e-43
Smith-Waterman score: 1179; 65.1% identity (80.2% similar) in 278 aa overlap (1-271:1-271)
10 20 30 40 50
pF1KB0 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNE--
::. : ::.:.:::::::::::::::: :::::.::::::: ::::::. :::::..:
XP_006 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 --EEDEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDN
::.: :::. ::::: ::: .:. :.:. .::. ..... .: . . ..:::
XP_006 REEEEEDGEEEEVEAVGAGAGWDTPMRDEDYEGDMEEEV-EEEEEGVFWTSGMSRSSWDN
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 VDYMWDEEEEEEEEDQDYYLGGLRP-DLRI-DVYREEEILEAYDEDEDEELYPDIHPPPS
.::.: :::.:::: ::::: .. ::: : :::.:: : :.:.: : . : :
XP_006 MDYVW--EEEDEEEDLDYYLGDMEEEDLRGEDEEDEEEVLE---EVEEEDLDP-VTPLPP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 LPLPGQ-FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEA
: : . :::::::::: :::::::::::::::.:::: ::: ::.: .:::.: :::::
XP_006 PPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQEA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 LKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSK
::::::::.::::::::::::::::::.:::::::::.
XP_006 LKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEPLRKHLEAVQKMKA
240 250 260 270 280 290
pF1KB0 AYNQ
XP_006 KEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASRL
300 310 320 330 340 350
>>XP_006714993 (OMIM: 610530) PREDICTED: E3 ubiquitin-pr (541 aa)
initn: 1266 init1: 954 opt: 1179 Z-score: 899.7 bits: 175.4 E(85289): 2.2e-43
Smith-Waterman score: 1179; 65.1% identity (80.2% similar) in 278 aa overlap (1-271:1-271)
10 20 30 40 50
pF1KB0 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNE--
::. : ::.:.:::::::::::::::: :::::.::::::: ::::::. :::::..:
XP_006 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 --EEDEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDN
::.: :::. ::::: ::: .:. :.:. .::. ..... .: . . ..:::
XP_006 REEEEEDGEEEEVEAVGAGAGWDTPMRDEDYEGDMEEEV-EEEEEGVFWTSGMSRSSWDN
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 VDYMWDEEEEEEEEDQDYYLGGLRP-DLRI-DVYREEEILEAYDEDEDEELYPDIHPPPS
.::.: :::.:::: ::::: .. ::: : :::.:: : :.:.: : . : :
XP_006 MDYVW--EEEDEEEDLDYYLGDMEEEDLRGEDEEDEEEVLE---EVEEEDLDP-VTPLPP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 LPLPGQ-FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEA
: : . :::::::::: :::::::::::::::.:::: ::: ::.: .:::.: :::::
XP_006 PPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQEA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 LKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSK
::::::::.::::::::::::::::::.:::::::::.
XP_006 LKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEPLRKHLEAVQKMKA
240 250 260 270 280 290
pF1KB0 AYNQ
XP_006 KEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASRL
300 310 320 330 340 350
>>XP_006714992 (OMIM: 610530) PREDICTED: E3 ubiquitin-pr (543 aa)
initn: 1266 init1: 954 opt: 1179 Z-score: 899.7 bits: 175.4 E(85289): 2.2e-43
Smith-Waterman score: 1179; 65.1% identity (80.2% similar) in 278 aa overlap (1-271:1-271)
10 20 30 40 50
pF1KB0 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNE--
::. : ::.:.:::::::::::::::: :::::.::::::: ::::::. :::::..:
XP_006 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 --EEDEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDN
::.: :::. ::::: ::: .:. :.:. .::. ..... .: . . ..:::
XP_006 REEEEEDGEEEEVEAVGAGAGWDTPMRDEDYEGDMEEEV-EEEEEGVFWTSGMSRSSWDN
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 VDYMWDEEEEEEEEDQDYYLGGLRP-DLRI-DVYREEEILEAYDEDEDEELYPDIHPPPS
.::.: :::.:::: ::::: .. ::: : :::.:: : :.:.: : . : :
XP_006 MDYVW--EEEDEEEDLDYYLGDMEEEDLRGEDEEDEEEVLE---EVEEEDLDP-VTPLPP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 LPLPGQ-FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEA
: : . :::::::::: :::::::::::::::.:::: ::: ::.: .:::.: :::::
XP_006 PPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQEA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 LKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSK
::::::::.::::::::::::::::::.:::::::::.
XP_006 LKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEPLRKHLEAVQKMKA
240 250 260 270 280 290
pF1KB0 AYNQ
XP_006 KEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASRL
300 310 320 330 340 350
>>NP_291027 (OMIM: 610530) E3 ubiquitin-protein ligase T (630 aa)
initn: 1266 init1: 954 opt: 1179 Z-score: 899.0 bits: 175.4 E(85289): 2.5e-43
Smith-Waterman score: 1179; 65.1% identity (80.2% similar) in 278 aa overlap (1-271:1-271)
10 20 30 40 50
pF1KB0 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNE--
::. : ::.:.:::::::::::::::: :::::.::::::: ::::::. :::::..:
NP_291 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 --EEDEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDN
::.: :::. ::::: ::: .:. :.:. .::. ..... .: . . ..:::
NP_291 REEEEEDGEEEEVEAVGAGAGWDTPMRDEDYEGDMEEEV-EEEEEGVFWTSGMSRSSWDN
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 VDYMWDEEEEEEEEDQDYYLGGLRP-DLRI-DVYREEEILEAYDEDEDEELYPDIHPPPS
.::.: :::.:::: ::::: .. ::: : :::.:: : :.:.: : . : :
NP_291 MDYVW--EEEDEEEDLDYYLGDMEEEDLRGEDEEDEEEVLE---EVEEEDLDP-VTPLPP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 LPLPGQ-FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEA
: : . :::::::::: :::::::::::::::.:::: ::: ::.: .:::.: :::::
NP_291 PPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQEA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 LKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSK
::::::::.::::::::::::::::::.:::::::::.
NP_291 LKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEPLRKHLEAVQKMKA
240 250 260 270 280 290
pF1KB0 AYNQ
NP_291 KEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASRL
300 310 320 330 340 350
>>NP_006501 (OMIM: 602165) zinc finger protein RFP [Homo (513 aa)
initn: 480 init1: 194 opt: 332 Z-score: 264.9 bits: 57.8 E(85289): 5.2e-08
Smith-Waterman score: 332; 49.5% identity (80.2% similar) in 91 aa overlap (182-272:52-141)
160 170 180 190 200 210
pF1KB0 EILEAYDEDEDEELYPDIHPPPSLPLPGQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQM
.:::::..: .: .::: .:::..:...:.
NP_006 YFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQL
30 40 50 60 70 80
220 230 240 250 260 270
pF1KB0 CPTPYRGNRSNDQGMCFKHQEALKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQ
: .. ....:.: ::.: :::.:: :. ::::: .:: :. ::::::::.:. ..
NP_006 -RTERPSGPGGEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFK
90 100 110 120 130 140
280 290
pF1KB0 EIKLETTLVGILQIEQESIHSKAYNQ
:
NP_006 EQIQNQLDHLKRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRL
150 160 170 180 190 200
>>NP_003132 (OMIM: 109092) E3 ubiquitin-protein ligase T (475 aa)
initn: 440 init1: 187 opt: 310 Z-score: 248.8 bits: 54.7 E(85289): 4.1e-07
Smith-Waterman score: 310; 45.9% identity (72.1% similar) in 111 aa overlap (179-288:47-151)
150 160 170 180 190 200
pF1KB0 REEEILEAYDEDEDEELYPDIHPPPSLPLPGQFTCPQCRKSFTRRSFRPNLQLANMVQII
: .:: ::. : ...::: ::::::. .
NP_003 PICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNLRPNRQLANMVNNL
20 30 40 50 60 70
210 220 230 240 250 260
pF1KB0 RQMCPTPYRGNRSNDQGM-CFKHQEALKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVV
... .:. :: : : : :.:::: : .:.: :: .::.:..:...::::..
NP_003 KEISQEAREGT----QGERCAVHGERLHLFCEKDGKALCWVCAQSRKHRDHAMVPLEEAA
80 90 100 110 120 130
270 280 290
pF1KB0 QEYQEIKLETTLVGILQIEQESIHSKAYNQ
::::: ::...: : :. .::
NP_003 QEYQE-KLQVAL-GELRRKQELAEKLEVEIAIKRADWKKTVETQKSRIHAEFVQQKNFLV
140 150 160 170 180 190
>>XP_016856908 (OMIM: 606123) PREDICTED: E3 ubiquitin-pr (262 aa)
initn: 472 init1: 213 opt: 284 Z-score: 232.2 bits: 50.8 E(85289): 3.4e-06
Smith-Waterman score: 284; 44.6% identity (70.3% similar) in 101 aa overlap (179-279:58-150)
150 160 170 180 190 200
pF1KB0 REEEILEAYDEDEDEELYPDIHPPPSLPLPGQFTCPQCRKSFTRRSFRPNLQLANMVQII
:.: ::.::. .:.. :: :......
XP_016 MTTCGHNFCRACIQLSWEKARGKKGRRKRKGSFPCPECREMSPQRNLLPNRLLTKVAEMA
30 40 50 60 70 80
210 220 230 240 250 260
pF1KB0 RQMCPTPYRGNRSNDQGMCFKHQEALKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQ
.: : : ...: .: .:.: :::::. :. ::::::::: :. : ::: ::.::
XP_016 QQH---P--GLQKQD--LCQEHHEPLKLFCQKDQSPICVVCRESREHRLHRVLPAEEAVQ
90 100 110 120 130 140
270 280 290
pF1KB0 EYQEIKLETTLVGILQIEQESIHSKAYNQ
:. .::: .
XP_016 GYK-LKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKERRERIVLEFEKMNLYLVEE
150 160 170 180 190
>>XP_016856907 (OMIM: 606123) PREDICTED: E3 ubiquitin-pr (262 aa)
initn: 472 init1: 213 opt: 284 Z-score: 232.2 bits: 50.8 E(85289): 3.4e-06
Smith-Waterman score: 284; 44.6% identity (70.3% similar) in 101 aa overlap (179-279:58-150)
150 160 170 180 190 200
pF1KB0 REEEILEAYDEDEDEELYPDIHPPPSLPLPGQFTCPQCRKSFTRRSFRPNLQLANMVQII
:.: ::.::. .:.. :: :......
XP_016 MTTCGHNFCRACIQLSWEKARGKKGRRKRKGSFPCPECREMSPQRNLLPNRLLTKVAEMA
30 40 50 60 70 80
210 220 230 240 250 260
pF1KB0 RQMCPTPYRGNRSNDQGMCFKHQEALKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQ
.: : : ...: .: .:.: :::::. :. ::::::::: :. : ::: ::.::
XP_016 QQH---P--GLQKQD--LCQEHHEPLKLFCQKDQSPICVVCRESREHRLHRVLPAEEAVQ
90 100 110 120 130 140
270 280 290
pF1KB0 EYQEIKLETTLVGILQIEQESIHSKAYNQ
:. .::: .
XP_016 GYK-LKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKERRERIVLEFEKMNLYLVEE
150 160 170 180 190
297 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:06:09 2016 done: Sat Nov 5 17:06:10 2016
Total Scan time: 7.170 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]