FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0903, 90 aa
  1>>>pF1KB0903 90 - 90 aa - 90 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8391+/-0.000528; mu= 10.7044+/- 0.032
 mean_var=53.6628+/-10.466, 0's: 0 Z-trim(111.7): 22  B-trim: 8 in 1/53
 Lambda= 0.175080
 statistics sampled from 12601 (12619) to 12601 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.388), width:  16
 Scan time:  1.470

The best scores are:                                      opt bits E(32554)
CCDS53705.1 CARD18 gene_id:59082|Hs108|chr11       (  90)  600 158.5   5e-40
CCDS41705.1 CARD16 gene_id:114769|Hs108|chr11      (  97)  329 90.1 2.1e-19
CCDS31661.1 CARD16 gene_id:114769|Hs108|chr11      ( 197)  329 90.3 3.9e-19
CCDS8329.1 CASP1 gene_id:834|Hs108|chr11           ( 383)  315 86.9   8e-18
CCDS8330.1 CASP1 gene_id:834|Hs108|chr11           ( 404)  315 86.9 8.3e-18
CCDS31662.1 CARD17 gene_id:440068|Hs108|chr11      ( 110)  302 83.3 2.7e-17


>>CCDS53705.1 CARD18 gene_id:59082|Hs108|chr11            (90 aa)
 initn: 600 init1: 600 opt: 600  Z-score: 832.1  bits: 158.5 E(32554): 5e-40
Smith-Waterman score: 600; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
               10        20        30        40        50        60

               70        80        90
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH
       ::::::::::::::::::::::::::::::
CCDS53 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH
               70        80        90

>>CCDS41705.1 CARD16 gene_id:114769|Hs108|chr11           (97 aa)
 initn: 329 init1: 329 opt: 329  Z-score: 461.7  bits: 90.1 E(32554): 2.1e-19
Smith-Waterman score: 329; 56.2% identity (80.9% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::..::::.: ::::.::: ::. .:..::.:.::. :: :::::.:.::: 
CCDS41 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90       
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH       
       :  :: ..:   : ..::::  ::  .::        
CCDS41 VIPKGAQACQICITYICEEDSYLAETLGLSAGPIPGN
               70        80        90       

>>CCDS31661.1 CARD16 gene_id:114769|Hs108|chr11           (197 aa)
 initn: 329 init1: 329 opt: 329  Z-score: 457.0  bits: 90.3 E(32554): 3.9e-19
Smith-Waterman score: 329; 56.2% identity (80.9% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::..::::.: ::::.::: ::. .:..::.:.::. :: :::::.:.::: 
CCDS31 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90                              
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH                              
       :  :: ..:   : ..::::  ::  .::                               
CCDS31 VIPKGAQACQICITYICEEDSYLAETLGLSAALQAVQDNPAMPTCSSPEGRIKLCFLEDA
               70        80        90       100       110       120

>>CCDS8329.1 CASP1 gene_id:834|Hs108|chr11                (383 aa)
 initn: 315 init1: 315 opt: 315  Z-score: 433.5  bits: 86.9 E(32554): 8e-18
Smith-Waterman score: 315; 53.9% identity (82.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::..::.:.: ::::.::: ::. .:...:.:.::. :: :::::.:.::: 
CCDS83 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90                              
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH                              
       :  :: ..:   : ..::::  ::. .::                               
CCDS83 VIPKGAQACQICITYICEEDSYLAGTLGLSAAPQAVQDNPAMPTSSGSEGNVKLCSLEEA
               70        80        90       100       110       120

>>CCDS8330.1 CASP1 gene_id:834|Hs108|chr11                (404 aa)
 initn: 315 init1: 315 opt: 315  Z-score: 433.1  bits: 86.9 E(32554): 8.3e-18
Smith-Waterman score: 315; 53.9% identity (82.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::..::.:.: ::::.::: ::. .:...:.:.::. :: :::::.:.::: 
CCDS83 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS
               10        20        30        40        50        60

               70        80        90                              
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH                              
       :  :: ..:   : ..::::  ::. .::                               
CCDS83 VIPKGAQACQICITYICEEDSYLAGTLGLSADQTSGNYLNMQDSQGVLSSFPAPQAVQDN
               70        80        90       100       110       120

>>CCDS31662.1 CARD17 gene_id:440068|Hs108|chr11           (110 aa)
 initn: 302 init1: 302 opt: 302  Z-score: 424.0  bits: 83.3 E(32554): 2.7e-17
Smith-Waterman score: 302; 55.1% identity (78.7% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB0 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL
       :::..:..::. ::.::: ::::.::  ::: .:.:::... :. :: :::::::.:.: 
CCDS31 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS
               10        20        30        40        50        60

               70        80        90                    
pF1KB0 VTGKGPKSCCKFIKHLCEEDPQLASKMGLH                    
       :  ::  .:   : ..:::: .::. .::                     
CCDS31 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGNHLTTQDSQIVLPS
               70        80        90       100       110




90 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:06:40 2016 done: Sat Nov  5 17:06:40 2016
 Total Scan time:  1.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]