FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0904, 299 aa
  1>>>pF1KB0904 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4360+/-0.000993; mu= 10.0504+/- 0.059
 mean_var=87.0473+/-17.133, 0's: 0 Z-trim(105.6): 22  B-trim: 11 in 1/49
 Lambda= 0.137466
 statistics sampled from 8497 (8505) to 8497 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.261), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS53741.1 PHB2 gene_id:11331|Hs108|chr12         ( 299) 1872 381.2 5.1e-106
CCDS58207.1 PHB2 gene_id:11331|Hs108|chr12         ( 261) 1286 265.0 4.4e-71
CCDS11548.1 PHB gene_id:5245|Hs108|chr17           ( 272)  862 180.9 9.3e-46
CCDS62244.1 PHB gene_id:5245|Hs108|chr17           ( 155)  480 105.0 3.6e-23


>>CCDS53741.1 PHB2 gene_id:11331|Hs108|chr12              (299 aa)
 initn: 1872 init1: 1872 opt: 1872  Z-score: 2016.8  bits: 381.2 E(32554): 5.1e-106
Smith-Waterman score: 1872; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB0 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGE
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB0 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK
              250       260       270       280       290         

>>CCDS58207.1 PHB2 gene_id:11331|Hs108|chr12              (261 aa)
 initn: 1286 init1: 1286 opt: 1286  Z-score: 1389.7  bits: 265.0 E(32554): 4.4e-71
Smith-Waterman score: 1554; 87.3% identity (87.3% similar) in 299 aa overlap (1-299:1-261)

               10        20        30        40        50        60
pF1KB0 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGE
       :::::::::::::::::::::::                                     
CCDS58 DVAITELSFSREYTAAVEAKQVA-------------------------------------
              190       200                                        

              250       260       270       280       290         
pF1KB0 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK
        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 -LSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK
            210       220       230       240       250       260 

>>CCDS11548.1 PHB gene_id:5245|Hs108|chr17                (272 aa)
 initn: 784 init1: 715 opt: 862  Z-score: 934.9  bits: 180.9 E(32554): 9.3e-46
Smith-Waterman score: 862; 53.9% identity (82.3% similar) in 254 aa overlap (29-280:15-267)

               10        20        30         40        50         
pF1KB0 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRES-VFTVEGGHRAIFFNRIGGVQ
                                   : ::: :: .: ...:..::::..:.:. :::
CCDS11               MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQ
                             10        20        30        40      

      60        70        80        90       100       110         
pF1KB0 QDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPS
        : ...:: :: ::: : :::.: :.:::..   ::::::: :::.::.: :: :..:: 
CCDS11 -DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPR
          50        60        70        80        90       100     

     120       130       140       150       160       170         
pF1KB0 MYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLIL
       ..  .: ::.:::::::..:.::::::.:.:..:::::  ::  .  .:::::  :.:::
CCDS11 IFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLIL
         110       120       130       140       150       160     

     180       190       200       210       220       230         
pF1KB0 DDVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLG
       :::..:.:.:..:.: ::::::::::::.::.:.::::.:...  :..:::...::....
CCDS11 DDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIA
         170       180       190       200       210       220     

     240        250       260       270       280       290        
pF1KB0 EAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGK
       ..: . . : :.:::..::..:.  .. :.:  :: : . ::                  
CCDS11 NSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ             
         230       240       250       260       270               

        
pF1KB0 K

>>CCDS62244.1 PHB gene_id:5245|Hs108|chr17                (155 aa)
 initn: 403 init1: 403 opt: 480  Z-score: 529.4  bits: 105.0 E(32554): 3.6e-23
Smith-Waterman score: 480; 57.8% identity (82.8% similar) in 128 aa overlap (29-155:15-141)

               10        20        30         40        50         
pF1KB0 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRES-VFTVEGGHRAIFFNRIGGVQ
                                   : ::: :: .: ...:..::::..:.:. :::
CCDS62               MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQ
                             10        20        30        40      

      60        70        80        90       100       110         
pF1KB0 QDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPS
        : ...:: :: ::: : :::.: :.:::..   ::::::: :::.::.: :: :..:: 
CCDS62 -DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPR
          50        60        70        80        90       100     

     120       130       140       150       160       170         
pF1KB0 MYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLIL
       ..  .: ::.:::::::..:.::::::.:.:..:::                        
CCDS62 IFTSIGEDYDERVLPSITTEILKSVVARFDAGELITYLPAGQSVLLQLPQ          
         110       120       130       140       150               

     180       190       200       210       220       230         
pF1KB0 DDVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLG




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:07:25 2016 done: Sat Nov  5 17:07:25 2016
 Total Scan time:  2.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]