FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0906, 305 aa
  1>>>pF1KB0906 305 - 305 aa - 305 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6092+/-0.000723; mu= 14.2821+/- 0.044
 mean_var=69.4527+/-14.141, 0's: 0 Z-trim(109.4): 3  B-trim: 69 in 1/52
 Lambda= 0.153897
 statistics sampled from 10861 (10863) to 10861 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.334), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS13750.1 PEX26 gene_id:55670|Hs108|chr22        ( 305) 2010 454.9 3.5e-128
CCDS56221.1 PEX26 gene_id:55670|Hs108|chr22        ( 256) 1494 340.3 9.2e-94


>>CCDS13750.1 PEX26 gene_id:55670|Hs108|chr22             (305 aa)
 initn: 2010 init1: 2010 opt: 2010  Z-score: 2414.8  bits: 454.9 E(32554): 3.5e-128
Smith-Waterman score: 2010; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KB0 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
              250       260       270       280       290       300

            
pF1KB0 LRIRD
       :::::
CCDS13 LRIRD
            

>>CCDS56221.1 PEX26 gene_id:55670|Hs108|chr22             (256 aa)
 initn: 1470 init1: 1470 opt: 1494  Z-score: 1796.8  bits: 340.3 E(32554): 9.2e-94
Smith-Waterman score: 1579; 83.9% identity (83.9% similar) in 305 aa overlap (1-305:1-256)

               10        20        30        40        50        60
pF1KB0 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
       ::::::::::::::::::::::::::::::::::::::::::                  
CCDS56 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLE------------------
              190       200       210       220                    

              250       260       270       280       290       300
pF1KB0 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
                                      :::::::::::::::::::::::::::::
CCDS56 -------------------------------ASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
                                           230       240       250 

            
pF1KB0 LRIRD
       :::::
CCDS56 LRIRD
            




305 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:08:25 2016 done: Sat Nov  5 17:08:25 2016
 Total Scan time:  2.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]