Result of FASTA (omim) for
pF1KB0906
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0906, 305 aa
1>>>pF1KB0906 305 - 305 aa - 305 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5521+/-0.000332; mu= 14.5415+/- 0.021
mean_var=70.4608+/-14.142, 0's: 0 Z-trim(116.2): 4 B-trim: 1479 in 1/55
Lambda= 0.152792
statistics sampled from 27171 (27175) to 27171 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.319), width: 16
Scan time: 8.420
The best scores are: opt bits E(85289)
NP_060399 (OMIM: 608666,614872,614873) peroxisome ( 305) 2010 451.9 7.6e-127
NP_001121121 (OMIM: 608666,614872,614873) peroxiso ( 305) 2010 451.9 7.6e-127
NP_001186248 (OMIM: 608666,614872,614873) peroxiso ( 256) 1494 338.1 1.1e-92
>>NP_060399 (OMIM: 608666,614872,614873) peroxisome asse (305 aa)
initn: 2010 init1: 2010 opt: 2010 Z-score: 2398.3 bits: 451.9 E(85289): 7.6e-127
Smith-Waterman score: 2010; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KB0 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
250 260 270 280 290 300
pF1KB0 LRIRD
:::::
NP_060 LRIRD
>>NP_001121121 (OMIM: 608666,614872,614873) peroxisome a (305 aa)
initn: 2010 init1: 2010 opt: 2010 Z-score: 2398.3 bits: 451.9 E(85289): 7.6e-127
Smith-Waterman score: 2010; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KB0 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
250 260 270 280 290 300
pF1KB0 LRIRD
:::::
NP_001 LRIRD
>>NP_001186248 (OMIM: 608666,614872,614873) peroxisome a (256 aa)
initn: 1470 init1: 1470 opt: 1494 Z-score: 1784.7 bits: 338.1 E(85289): 1.1e-92
Smith-Waterman score: 1579; 83.9% identity (83.9% similar) in 305 aa overlap (1-305:1-256)
10 20 30 40 50 60
pF1KB0 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCER
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLW
::::::::::::::::::::::::::::::::::::::::::
NP_001 VVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLE------------------
190 200 210 220
250 260 270 280 290 300
pF1KB0 DSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
:::::::::::::::::::::::::::::
NP_001 -------------------------------ASPSSLHFLYKLAQLFRWIRKAAFSRLYQ
230 240 250
pF1KB0 LRIRD
:::::
NP_001 LRIRD
305 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:08:25 2016 done: Sat Nov 5 17:08:27 2016
Total Scan time: 8.420 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]