FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0912, 317 aa
  1>>>pF1KB0912 317 - 317 aa - 317 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5791+/-0.00105; mu= 10.7303+/- 0.063
 mean_var=136.7188+/-29.151, 0's: 0 Z-trim(107.8): 111  B-trim: 386 in 2/50
 Lambda= 0.109688
 statistics sampled from 9668 (9785) to 9668 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.301), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS8909.1 RNF41 gene_id:10193|Hs108|chr12         ( 317) 2178 356.2   2e-98
CCDS8910.1 RNF41 gene_id:10193|Hs108|chr12         ( 246) 1656 273.4 1.2e-73


>>CCDS8909.1 RNF41 gene_id:10193|Hs108|chr12              (317 aa)
 initn: 2178 init1: 2178 opt: 2178  Z-score: 1880.5  bits: 356.2 E(32554): 2e-98
Smith-Waterman score: 2178; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KB0 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 TVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 GLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 GLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 RSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 SIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDM
              250       260       270       280       290       300

              310       
pF1KB0 VQEPGLVMIFAHGVEEI
       :::::::::::::::::
CCDS89 VQEPGLVMIFAHGVEEI
              310       

>>CCDS8910.1 RNF41 gene_id:10193|Hs108|chr12              (246 aa)
 initn: 1656 init1: 1656 opt: 1656  Z-score: 1435.5  bits: 273.4 E(32554): 1.2e-73
Smith-Waterman score: 1656; 100.0% identity (100.0% similar) in 246 aa overlap (72-317:1-246)

              50        60        70        80        90       100 
pF1KB0 CITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMS
                                     ::::::::::::::::::::::::::::::
CCDS89                               MRNMLSKLQIACDNAVFGCSAVVRLDNLMS
                                             10        20        30

             110       120       130       140       150       160 
pF1KB0 HLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 HLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKH
               40        50        60        70        80        90

             170       180       190       200       210       220 
pF1KB0 QLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 QLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTP
              100       110       120       130       140       150

             230       240       250       260       270       280 
pF1KB0 DAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIP
              160       170       180       190       200       210

             290       300       310       
pF1KB0 GKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI
       ::::::::::::::::::::::::::::::::::::
CCDS89 GKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI
              220       230       240      




317 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:12:46 2016 done: Sat Nov  5 17:12:46 2016
 Total Scan time:  2.490 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]