FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0921, 121 aa
  1>>>pF1KB0921 121 - 121 aa - 121 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5480+/-0.00032; mu= 13.5424+/- 0.020
 mean_var=45.1743+/- 9.079, 0's: 0 Z-trim(113.9): 30  B-trim: 669 in 1/53
 Lambda= 0.190822
 statistics sampled from 23489 (23519) to 23489 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.276), width:  16
 Scan time:  4.540

The best scores are:                                      opt bits E(85289)
NP_001034779 (OMIM: 613202) chromosome transmissio ( 121)  786 223.2 8.2e-59
NP_001035236 (OMIM: 613202) chromosome transmissio ( 121)  786 223.2 8.2e-59
XP_016878859 (OMIM: 613202) PREDICTED: chromosome  ( 121)  786 223.2 8.2e-59


>>NP_001034779 (OMIM: 613202) chromosome transmission fi  (121 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 1176.9  bits: 223.2 E(85289): 8.2e-59
Smith-Waterman score: 786; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KB0 MVQIVISSARAGGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVQIVISSARAGGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 GKIIHLEKPFAVLVKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKIIHLEKPFAVLVKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPKK
               70        80        90       100       110       120

        
pF1KB0 V
       :
NP_001 V
        

>>NP_001035236 (OMIM: 613202) chromosome transmission fi  (121 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 1176.9  bits: 223.2 E(85289): 8.2e-59
Smith-Waterman score: 786; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KB0 MVQIVISSARAGGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVQIVISSARAGGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 GKIIHLEKPFAVLVKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKIIHLEKPFAVLVKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPKK
               70        80        90       100       110       120

        
pF1KB0 V
       :
NP_001 V
        

>>XP_016878859 (OMIM: 613202) PREDICTED: chromosome tran  (121 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 1176.9  bits: 223.2 E(85289): 8.2e-59
Smith-Waterman score: 786; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KB0 MVQIVISSARAGGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVQIVISSARAGGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 GKIIHLEKPFAVLVKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GKIIHLEKPFAVLVKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPKK
               70        80        90       100       110       120

        
pF1KB0 V
       :
XP_016 V
        




121 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:56:57 2016 done: Sat Nov  5 17:56:57 2016
 Total Scan time:  4.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]