Result of FASTA (ccds) for
pF1KB0922
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0922, 345 aa
1>>>pF1KB0922 345 - 345 aa - 345 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8509+/-0.000727; mu= 10.4434+/- 0.044
mean_var=130.0422+/-25.756, 0's: 0 Z-trim(114.2): 42 B-trim: 230 in 1/53
Lambda= 0.112469
statistics sampled from 14784 (14825) to 14784 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.455), width: 16
Scan time: 3.270
The best scores are: opt bits E(32554)
CCDS45514.1 PARD6A gene_id:50855|Hs108|chr16 ( 345) 2310 385.5 3.6e-107
CCDS10843.1 PARD6A gene_id:50855|Hs108|chr16 ( 346) 2298 383.5 1.4e-106
CCDS33485.1 PARD6B gene_id:84612|Hs108|chr20 ( 372) 1085 186.7 2.6e-47
CCDS12022.1 PARD6G gene_id:84552|Hs108|chr18 ( 376) 1081 186.1 4.1e-47
>>CCDS45514.1 PARD6A gene_id:50855|Hs108|chr16 (345 aa)
initn: 2310 init1: 2310 opt: 2310 Z-score: 2037.5 bits: 385.5 E(32554): 3.6e-107
Smith-Waterman score: 2310; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB0 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 YTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKREADSSGLAFASNSLQRRKKGLLLRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKREADSSGLAFASNSLQRRKKGLLLRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVRV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 APQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 APQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 LIVTVKPANQRNNVVRGASGRLTGPPSAGPGPAEPDSDDDSSDLVIENRQPPSSNGLSQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LIVTVKPANQRNNVVRGASGRLTGPPSAGPGPAEPDSDDDSSDLVIENRQPPSSNGLSQG
250 260 270 280 290 300
310 320 330 340
pF1KB0 PPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL
:::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL
310 320 330 340
>>CCDS10843.1 PARD6A gene_id:50855|Hs108|chr16 (346 aa)
initn: 1697 init1: 1697 opt: 2298 Z-score: 2027.0 bits: 383.5 E(32554): 1.4e-106
Smith-Waterman score: 2298; 99.7% identity (99.7% similar) in 346 aa overlap (1-345:1-346)
10 20 30 40 50 60
pF1KB0 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLG
10 20 30 40 50 60
70 80 90 100 110
pF1KB0 YTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKR-EADSSGLAFASNSLQRRKKGLLLR
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS10 YTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKRAEADSSGLAFASNSLQRRKKGLLLR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 PVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVR
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 VAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSH
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 NLIVTVKPANQRNNVVRGASGRLTGPPSAGPGPAEPDSDDDSSDLVIENRQPPSSNGLSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NLIVTVKPANQRNNVVRGASGRLTGPPSAGPGPAEPDSDDDSSDLVIENRQPPSSNGLSQ
250 260 270 280 290 300
300 310 320 330 340
pF1KB0 GPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL
310 320 330 340
>>CCDS33485.1 PARD6B gene_id:84612|Hs108|chr20 (372 aa)
initn: 1007 init1: 1007 opt: 1085 Z-score: 962.9 bits: 186.7 E(32554): 2.6e-47
Smith-Waterman score: 1100; 57.7% identity (78.5% similar) in 317 aa overlap (1-302:1-308)
10 20 30 40 50
pF1KB0 MARPQRTPARSPD-SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLL
: : .: : : . .:::::: ::::::.: :.. . :.:: ::. ::.::..:::.
CCDS33 MNRSHRHGAGSGCLGTMEVKSKFGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVDVLV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 GYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKRE-ADSSGLAFASNSLQRRKKGL--
::.: ::::::..:::. :.:.... : ::...::.: :: : ::....: ..:. :
CCDS33 GYADIHGDLLPINNDDNYHKAVSTANPLLRIFIQKKEEADYS--AFGTDTLIKKKNVLTN
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 LLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGM
.::: : .: ..::.::::: :::.::::.::::::::::.:.:...:::::::::
CCDS33 VLRP-DNHRKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 SVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVA
::::.:.:::.:::::::::: ::::.:::::::.::.::::::::.::.::::::::.:
CCDS33 SVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA
180 190 200 210 220 230
240 250 260 270 280
pF1KB0 NSHNLIVTVKPANQRNNVVR-----GASGRLTGPPSAG-PGPAEP-----DSDDDSSDLV
::.:::.::.:::::::::: :.::. : : : :: : :.. .:..
CCDS33 NSRNLIITVRPANQRNNVVRNSRTSGSSGQSTDNSLLGYPQQIEPSFEPEDEDSEEDDII
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB0 IENRQPPSSNGLSQGPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGDGSGFSL
::. ::. : :
CCDS33 IED------NGVPQQIPKAVPNTESLESLTQIELSFESGQNGFIPSNEVSLAAIASSSNT
300 310 320 330 340 350
>>CCDS12022.1 PARD6G gene_id:84552|Hs108|chr18 (376 aa)
initn: 756 init1: 756 opt: 1081 Z-score: 959.3 bits: 186.1 E(32554): 4.1e-47
Smith-Waterman score: 1107; 59.3% identity (77.2% similar) in 312 aa overlap (14-306:17-323)
10 20 30 40 50
pF1KB0 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDV
: ::::::: ::::::.: : . . :..: .:. .:.: . ::
CCDS12 MNRSFHKSQTLRFYDCSAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 LLGYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKREADSSGLAFASNSLQRRKKGL-
.::.:.::::::..:::.. .:..:. : ::...:::: : .....:: ::...:
CCDS12 TIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERG-SLGAGSLCRRRRALG
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 LLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGM
:: .: : : : :.::.::: :::.:::::.::::::::::.:: ..:::::::::
CCDS12 ALRDEGP-RRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGA
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 SVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVA
::::.:.:::.::::::::.: ::::::::::::.::.::::::::::::::::::::.:
CCDS12 SVRVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIA
180 190 200 210 220 230
240 250 260 270
pF1KB0 NSHNLIVTVKPANQRNNVVRGASGRL---TGPPSAGP----GPAEP-----------DSD
::::::::::::::::::::: :: .:::: : :: : .::
CCDS12 NSHNLIVTVKPANQRNNVVRG--GRALGSSGPPSDGTAGFVGPPAPRVLQNFHPDEAESD
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB0 DDSSDLVIENRQPPSSNGLSQGPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRG
.:. :.:::. :. . : : .:
CCDS12 EDN-DVVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRAD
300 310 320 330 340 350
345 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:15:35 2016 done: Sat Nov 5 17:15:36 2016
Total Scan time: 3.270 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]