Result of FASTA (ccds) for
pF1KB0928
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0928, 364 aa
1>>>pF1KB0928 364 - 364 aa - 364 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3907+/-0.00122; mu= 13.1530+/- 0.074
mean_var=160.3482+/-34.923, 0's: 0 Z-trim(107.0): 117 B-trim: 558 in 1/49
Lambda= 0.101284
statistics sampled from 9173 (9294) to 9173 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.285), width: 16
Scan time: 2.370
The best scores are: opt bits E(32554)
CCDS41676.1 RBM4 gene_id:5936|Hs108|chr11 ( 364) 2388 361.2 8.2e-100
CCDS8149.1 RBM4B gene_id:83759|Hs108|chr11 ( 359) 2134 324.0 1.2e-88
CCDS55774.1 RBM4 gene_id:100526737|Hs108|chr11 ( 339) 1493 230.4 1.8e-60
CCDS55777.1 RBM4 gene_id:5936|Hs108|chr11 ( 173) 911 145.0 4.7e-35
CCDS55776.1 RBM4 gene_id:5936|Hs108|chr11 ( 143) 905 144.0 7.6e-35
CCDS66144.1 RBM4B gene_id:83759|Hs108|chr11 ( 143) 899 143.1 1.4e-34
CCDS8147.1 RBM14 gene_id:10432|Hs108|chr11 ( 669) 471 81.4 2.6e-15
CCDS55772.1 RBM14 gene_id:10432|Hs108|chr11 ( 156) 433 75.1 4.7e-14
>>CCDS41676.1 RBM4 gene_id:5936|Hs108|chr11 (364 aa)
initn: 2388 init1: 2388 opt: 2388 Z-score: 1905.5 bits: 361.2 E(32554): 8.2e-100
Smith-Waterman score: 2388; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)
10 20 30 40 50 60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR
310 320 330 340 350 360
pF1KB0 YSAF
::::
CCDS41 YSAF
>>CCDS8149.1 RBM4B gene_id:83759|Hs108|chr11 (359 aa)
initn: 1878 init1: 1466 opt: 2134 Z-score: 1704.9 bits: 324.0 E(32554): 1.2e-88
Smith-Waterman score: 2134; 89.3% identity (97.0% similar) in 365 aa overlap (1-364:1-359)
10 20 30 40 50 60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
:::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::::
CCDS81 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::.
CCDS81 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
130 140 150 160 170 180
190 200 210 220 230
pF1KB0 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAA-
:::::.:::::::::::::::::.::.:.:::.:::::: :::: :. :::::::::::
CCDS81 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALD-YYKRYRV-RSYEAVAAAAAA
190 200 210 220 230
240 250 260 270 280 290
pF1KB0 SVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAA
:.:::::::.:.:::::.:...:::.:::.:::::::::.::::::.:: :::::.
CCDS81 SAYNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAAT----
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 STSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA
..:::::::::::::.: .:::::::::: ::::::::::.:::::::::::::::.:::
CCDS81 TSSYYGRDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQYVDRA
300 310 320 330 340 350
360
pF1KB0 RYSAF
:::::
CCDS81 RYSAF
>>CCDS55774.1 RBM4 gene_id:100526737|Hs108|chr11 (339 aa)
initn: 1493 init1: 1493 opt: 1493 Z-score: 1199.0 bits: 230.4 E(32554): 1.8e-60
Smith-Waterman score: 1730; 74.8% identity (85.2% similar) in 365 aa overlap (2-364:1-339)
10 20 30 40 50
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
.:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: ..
CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
:. : . :: :. . .. :. :::.: .::..:::. ::. : :::::.::
CCDS55 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
:::::::::::::::::::::::::::::::::::::::::
CCDS55 -------------------GKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
120 130 140 150
180 190 200 210 220 230
pF1KB0 RSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAA
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB0 ASVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTA
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB0 ASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADR
280 290 300 310 320 330
360
pF1KB0 ARYSAF
::::::
CCDS55 ARYSAF
>>CCDS55777.1 RBM4 gene_id:5936|Hs108|chr11 (173 aa)
initn: 911 init1: 911 opt: 911 Z-score: 742.8 bits: 145.0 E(32554): 4.7e-35
Smith-Waterman score: 911; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
:::::::::::::::::::
CCDS55 AEDAVEAIRGLDNTEFQGKITPVTEGYCCCNKGHTYIFKNCNLILESRKSRRC
130 140 150 160 170
>>CCDS55776.1 RBM4 gene_id:5936|Hs108|chr11 (143 aa)
initn: 905 init1: 905 opt: 905 Z-score: 739.0 bits: 144.0 E(32554): 7.6e-35
Smith-Waterman score: 905; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
::::::::::::::::::
CCDS55 AEDAVEAIRGLDNTEFQGGMCVG
130 140
>>CCDS66144.1 RBM4B gene_id:83759|Hs108|chr11 (143 aa)
initn: 1093 init1: 899 opt: 899 Z-score: 734.3 bits: 143.1 E(32554): 1.4e-34
Smith-Waterman score: 899; 97.8% identity (100.0% similar) in 139 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
:::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::::
CCDS66 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
::::::::::::::::::.
CCDS66 AEDAVEAIRGLDNTEFQGRIIAD
130 140
>>CCDS8147.1 RBM14 gene_id:10432|Hs108|chr11 (669 aa)
initn: 505 init1: 322 opt: 471 Z-score: 388.5 bits: 81.4 E(32554): 2.6e-15
Smith-Waterman score: 487; 34.3% identity (59.8% similar) in 321 aa overlap (2-305:1-319)
10 20 30 40 50
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
.:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: ..
CCDS81 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
:. : . :: :. . .. :. :::.: .::..:::. ::. : :::::.:::::::::
CCDS81 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
:. :: :: :.. : .:::..:.:::. . .::.. ::: . : : . :
CCDS81 EKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG-DKTKKPGAGDTAFP-G
120 130 140 150 160 170
180 190 200 210 220
pF1KB0 RSGRVA--DLTEQYNEQYGA----VRTPYTMSYG---DSLYYN---NAYGA-LDAYYKRC
.: : : . .... :. .: : .: . : . .: : : :
CCDS81 TGGFSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATY
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB0 RAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASHLTSTSLD-PYDRHLL-PTSGAA
:: : :: :. :.. ..: :.:: :: .: :.: .:
CCDS81 RAQPSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSA
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB0 ATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNS
:... . ..: .:.. : ::
CCDS81 AASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYG
300 310 320 330 340 350
>>CCDS55772.1 RBM14 gene_id:10432|Hs108|chr11 (156 aa)
initn: 391 init1: 288 opt: 433 Z-score: 365.8 bits: 75.1 E(32554): 4.7e-14
Smith-Waterman score: 433; 45.3% identity (75.7% similar) in 148 aa overlap (2-147:1-148)
10 20 30 40 50
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
.:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: ..
CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
:. : . :: :. . .. :. :::.: .::..:::. ::. : :::::.:::::::::
CCDS55 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
:. :: :: :.. : .:::..:.:::
CCDS55 EKEADAKAAIAQLNGKEVKGKRINVELSTKGMVPTGV
120 130 140 150
364 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:57:35 2016 done: Sat Nov 5 17:57:35 2016
Total Scan time: 2.370 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]