Result of FASTA (omim) for
pF1KB0928
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0928, 364 aa
1>>>pF1KB0928 364 - 364 aa - 364 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6837+/-0.000512; mu= 18.1625+/- 0.033
mean_var=227.7636+/-57.872, 0's: 0 Z-trim(114.2): 104 B-trim: 2678 in 2/50
Lambda= 0.084983
statistics sampled from 23765 (23905) to 23765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.28), width: 16
Scan time: 7.820
The best scores are: opt bits E(85289)
NP_002887 (OMIM: 602571) RNA-binding protein 4 iso ( 364) 2388 306.1 7.9e-83
NP_001185773 (OMIM: 602571) RNA-binding protein 4 ( 173) 911 124.5 1.8e-28
NP_001185772 (OMIM: 602571) RNA-binding protein 4 ( 143) 905 123.6 2.7e-28
NP_006319 (OMIM: 612409) RNA-binding protein 14 is ( 669) 471 71.5 6e-12
NP_001185765 (OMIM: 612409) RNA-binding protein 14 ( 156) 433 65.8 7.5e-11
NP_001185766 (OMIM: 612409) RNA-binding protein 14 ( 119) 301 49.4 4.9e-06
>>NP_002887 (OMIM: 602571) RNA-binding protein 4 isoform (364 aa)
initn: 2388 init1: 2388 opt: 2388 Z-score: 1608.0 bits: 306.1 E(85289): 7.9e-83
Smith-Waterman score: 2388; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)
10 20 30 40 50 60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR
310 320 330 340 350 360
pF1KB0 YSAF
::::
NP_002 YSAF
>>NP_001185773 (OMIM: 602571) RNA-binding protein 4 isof (173 aa)
initn: 911 init1: 911 opt: 911 Z-score: 632.1 bits: 124.5 E(85289): 1.8e-28
Smith-Waterman score: 911; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
:::::::::::::::::::
NP_001 AEDAVEAIRGLDNTEFQGKITPVTEGYCCCNKGHTYIFKNCNLILESRKSRRC
130 140 150 160 170
>>NP_001185772 (OMIM: 602571) RNA-binding protein 4 isof (143 aa)
initn: 905 init1: 905 opt: 905 Z-score: 628.9 bits: 123.6 E(85289): 2.7e-28
Smith-Waterman score: 905; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
::::::::::::::::::
NP_001 AEDAVEAIRGLDNTEFQGGMCVG
130 140
>>NP_006319 (OMIM: 612409) RNA-binding protein 14 isofor (669 aa)
initn: 505 init1: 322 opt: 471 Z-score: 335.5 bits: 71.5 E(85289): 6e-12
Smith-Waterman score: 487; 34.3% identity (59.8% similar) in 321 aa overlap (2-305:1-319)
10 20 30 40 50
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
.:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: ..
NP_006 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
:. : . :: :. . .. :. :::.: .::..:::. ::. : :::::.:::::::::
NP_006 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
:. :: :: :.. : .:::..:.:::. . .::.. ::: . : : . :
NP_006 EKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG-DKTKKPGAGDTAFP-G
120 130 140 150 160 170
180 190 200 210 220
pF1KB0 RSGRVA--DLTEQYNEQYGA----VRTPYTMSYG---DSLYYN---NAYGA-LDAYYKRC
.: : : . .... :. .: : .: . : . .: : : :
NP_006 TGGFSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATY
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB0 RAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASHLTSTSLD-PYDRHLL-PTSGAA
:: : :: :. :.. ..: :.:: :: .: :.: .:
NP_006 RAQPSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSA
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB0 ATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNS
:... . ..: .:.. : ::
NP_006 AASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYG
300 310 320 330 340 350
>>NP_001185765 (OMIM: 612409) RNA-binding protein 14 iso (156 aa)
initn: 391 init1: 288 opt: 433 Z-score: 315.8 bits: 65.8 E(85289): 7.5e-11
Smith-Waterman score: 433; 45.3% identity (75.7% similar) in 148 aa overlap (2-147:1-148)
10 20 30 40 50
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
.:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: ..
NP_001 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
:. : . :: :. . .. :. :::.: .::..:::. ::. : :::::.:::::::::
NP_001 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
:. :: :: :.. : .:::..:.:::
NP_001 EKEADAKAAIAQLNGKEVKGKRINVELSTKGMVPTGV
120 130 140 150
>>NP_001185766 (OMIM: 612409) RNA-binding protein 14 iso (119 aa)
initn: 259 init1: 156 opt: 301 Z-score: 229.3 bits: 49.4 E(85289): 4.9e-06
Smith-Waterman score: 301; 41.1% identity (75.0% similar) in 112 aa overlap (2-111:1-112)
10 20 30 40 50
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
.:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: ..
NP_001 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
:. : . :: :. . .. :. :::.: .::..:::. ::. : :::::.::
NP_001 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGMVPTGV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
364 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:57:36 2016 done: Sat Nov 5 17:57:37 2016
Total Scan time: 7.820 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]