FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0933, 148 aa
  1>>>pF1KB0933 148 - 148 aa - 148 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1037+/-0.00062; mu= 14.1056+/- 0.037
 mean_var=92.2218+/-18.775, 0's: 0 Z-trim(114.3): 91  B-trim: 813 in 1/53
 Lambda= 0.133554
 statistics sampled from 14723 (14847) to 14723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.456), width:  16
 Scan time:  1.860

The best scores are:                                      opt bits E(32554)
CCDS13074.1 RNF24 gene_id:11237|Hs108|chr20        ( 148) 1054 211.8 1.2e-55
CCDS46577.1 RNF24 gene_id:11237|Hs108|chr20        ( 169) 1054 211.9 1.3e-55
CCDS6091.1 RNF122 gene_id:79845|Hs108|chr8         ( 155)  566 117.8 2.5e-27


>>CCDS13074.1 RNF24 gene_id:11237|Hs108|chr20             (148 aa)
 initn: 1054 init1: 1054 opt: 1054  Z-score: 1112.4  bits: 211.8 E(32554): 1.2e-55
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KB0 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKEFYAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKEFYAY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 KQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM
               70        80        90       100       110       120

              130       140        
pF1KB0 PVLQLAQLHSKQDRGPPQGPLPGAENIV
       ::::::::::::::::::::::::::::
CCDS13 PVLQLAQLHSKQDRGPPQGPLPGAENIV
              130       140        

>>CCDS46577.1 RNF24 gene_id:11237|Hs108|chr20             (169 aa)
 initn: 1054 init1: 1054 opt: 1054  Z-score: 1111.7  bits: 211.9 E(32554): 1.3e-55
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:22-169)

                                    10        20        30         
pF1KB0                      MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
                            :::::::::::::::::::::::::::::::::::::::
CCDS46 MLNKSGESRYPALFPVLGGSSMSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB0 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
               70        80        90       100       110       120

     100       110       120       130       140        
pF1KB0 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
              130       140       150       160         

>>CCDS6091.1 RNF122 gene_id:79845|Hs108|chr8              (155 aa)
 initn: 571 init1: 296 opt: 566  Z-score: 604.0  bits: 117.8 E(32554): 2.5e-27
Smith-Waterman score: 566; 67.3% identity (90.3% similar) in 113 aa overlap (12-122:25-137)

                            10        20        30        40       
pF1KB0              MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLI
                               :: :.::.::::::.:.:::.::::.:::.::::.:
CCDS60 MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFI
               10        20        30        40        50        60

         50        60        70         80        90       100     
pF1KB0 -RLRHQAHKEFYAYKQVILKEKVKELNLH-ELCAVCLEDFKPRDELGICPCKHAFHRKCL
        .::.::..: :.::.:.::  .:.:.:. . ::::::::: .::::. ::.::::::::
CCDS60 SKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCL
               70        80        90       100       110       120

         110       120       130       140        
pF1KB0 IKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
       .:::::: :::.:: :.                          
CCDS60 VKWLEVRCVCPMCNKPIASPSEATQNIGILLDELV        
              130       140       150             




148 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:19:44 2016 done: Sat Nov  5 17:19:44 2016
 Total Scan time:  1.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]