Result of FASTA (omim) for
pF1KB0933
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0933, 148 aa
1>>>pF1KB0933 148 - 148 aa - 148 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7108+/-0.000274; mu= 16.5629+/- 0.017
mean_var=96.1522+/-20.120, 0's: 0 Z-trim(121.3): 211 B-trim: 1892 in 2/54
Lambda= 0.130796
statistics sampled from 37396 (37694) to 37396 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.442), width: 16
Scan time: 5.500
The best scores are: opt bits E(85289)
NP_009150 (OMIM: 612489) RING finger protein 24 is ( 148) 1054 207.8 5.4e-54
NP_001308678 (OMIM: 612489) RING finger protein 24 ( 148) 1054 207.8 5.4e-54
NP_001127809 (OMIM: 612489) RING finger protein 24 ( 148) 1054 207.8 5.4e-54
XP_011527448 (OMIM: 612489) PREDICTED: RING finger ( 163) 1054 207.8 5.7e-54
NP_001127810 (OMIM: 612489) RING finger protein 24 ( 169) 1054 207.8 5.9e-54
XP_016883109 (OMIM: 612489) PREDICTED: RING finger ( 169) 1054 207.8 5.9e-54
XP_011527447 (OMIM: 612489) PREDICTED: RING finger ( 169) 1054 207.8 5.9e-54
XP_016883110 (OMIM: 612489) PREDICTED: RING finger ( 169) 1054 207.8 5.9e-54
XP_016883111 (OMIM: 612489) PREDICTED: RING finger ( 137) 725 145.6 2.5e-35
XP_011527449 (OMIM: 612489) PREDICTED: RING finger ( 137) 725 145.6 2.5e-35
XP_016861149 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 250) 234 53.3 2.8e-07
XP_016861145 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 234 53.3 2.9e-07
XP_016861146 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 234 53.3 2.9e-07
XP_011510678 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 234 53.3 2.9e-07
XP_005247149 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 234 53.3 2.9e-07
XP_016861148 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 234 53.3 2.9e-07
XP_016861147 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 234 53.3 2.9e-07
XP_016861144 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381) 234 53.5 3.7e-07
XP_011510676 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381) 234 53.5 3.7e-07
XP_016861143 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381) 234 53.5 3.7e-07
NP_009213 (OMIM: 609247) E3 ubiquitin-protein liga ( 381) 234 53.5 3.7e-07
NP_899237 (OMIM: 609247) E3 ubiquitin-protein liga ( 381) 234 53.5 3.7e-07
XP_011510675 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 381) 234 53.5 3.7e-07
NP_001307293 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 229 52.5 6.3e-07
NP_001307291 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 229 52.5 6.3e-07
NP_001307292 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 229 52.5 6.3e-07
NP_001307294 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 229 52.5 6.3e-07
NP_001307286 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 229 52.6 6.7e-07
NP_001307290 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 229 52.6 6.7e-07
NP_001307287 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 229 52.6 6.7e-07
NP_056343 (OMIM: 610431) E3 ubiquitin-protein liga ( 350) 229 52.6 6.7e-07
XP_016879916 (OMIM: 610431) PREDICTED: E3 ubiquiti ( 350) 229 52.6 6.7e-07
NP_001307288 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 229 52.6 6.7e-07
NP_001307285 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 229 52.6 6.7e-07
NP_001307289 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 229 52.6 6.7e-07
XP_016861150 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 193) 207 48.1 8.2e-06
XP_016879917 (OMIM: 610431) PREDICTED: E3 ubiquiti ( 227) 201 47.0 2e-05
NP_078815 (OMIM: 300439) E3 ubiquitin-protein liga ( 402) 191 45.5 0.00011
XP_016869786 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402) 191 45.5 0.00011
XP_016869785 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402) 191 45.5 0.00011
NP_919445 (OMIM: 300439) E3 ubiquitin-protein liga ( 428) 191 45.5 0.00011
NP_919313 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 191 45.5 0.00011
XP_011516014 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 191 45.5 0.00011
XP_005251423 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 191 45.5 0.00011
XP_005251425 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 191 45.5 0.00011
XP_005251424 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 191 45.5 0.00011
NP_919309 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 191 45.5 0.00011
XP_011516015 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 191 45.5 0.00011
NP_919311 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 191 45.5 0.00011
XP_006716784 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 191 45.5 0.00011
>>NP_009150 (OMIM: 612489) RING finger protein 24 isofor (148 aa)
initn: 1054 init1: 1054 opt: 1054 Z-score: 1090.4 bits: 207.8 E(85289): 5.4e-54
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KB0 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKEFYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKEFYAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 KQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM
70 80 90 100 110 120
130 140
pF1KB0 PVLQLAQLHSKQDRGPPQGPLPGAENIV
::::::::::::::::::::::::::::
NP_009 PVLQLAQLHSKQDRGPPQGPLPGAENIV
130 140
>>NP_001308678 (OMIM: 612489) RING finger protein 24 iso (148 aa)
initn: 1054 init1: 1054 opt: 1054 Z-score: 1090.4 bits: 207.8 E(85289): 5.4e-54
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KB0 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKEFYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKEFYAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 KQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM
70 80 90 100 110 120
130 140
pF1KB0 PVLQLAQLHSKQDRGPPQGPLPGAENIV
::::::::::::::::::::::::::::
NP_001 PVLQLAQLHSKQDRGPPQGPLPGAENIV
130 140
>>NP_001127809 (OMIM: 612489) RING finger protein 24 iso (148 aa)
initn: 1054 init1: 1054 opt: 1054 Z-score: 1090.4 bits: 207.8 E(85289): 5.4e-54
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KB0 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKEFYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKEFYAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 KQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM
70 80 90 100 110 120
130 140
pF1KB0 PVLQLAQLHSKQDRGPPQGPLPGAENIV
::::::::::::::::::::::::::::
NP_001 PVLQLAQLHSKQDRGPPQGPLPGAENIV
130 140
>>XP_011527448 (OMIM: 612489) PREDICTED: RING finger pro (163 aa)
initn: 1054 init1: 1054 opt: 1054 Z-score: 1089.9 bits: 207.8 E(85289): 5.7e-54
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:16-163)
10 20 30 40
pF1KB0 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCY
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 MCAEGRWKAENICSSMSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCY
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB0 LIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCL
70 80 90 100 110 120
110 120 130 140
pF1KB0 IKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
:::::::::::::::::::::::::::::::::::::::::::
XP_011 IKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
130 140 150 160
>>NP_001127810 (OMIM: 612489) RING finger protein 24 iso (169 aa)
initn: 1054 init1: 1054 opt: 1054 Z-score: 1089.7 bits: 207.8 E(85289): 5.9e-54
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:22-169)
10 20 30
pF1KB0 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
:::::::::::::::::::::::::::::::::::::::
NP_001 MLNKSGESRYPALFPVLGGSSMSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB0 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
70 80 90 100 110 120
100 110 120 130 140
pF1KB0 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
130 140 150 160
>>XP_016883109 (OMIM: 612489) PREDICTED: RING finger pro (169 aa)
initn: 1054 init1: 1054 opt: 1054 Z-score: 1089.7 bits: 207.8 E(85289): 5.9e-54
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:22-169)
10 20 30
pF1KB0 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
:::::::::::::::::::::::::::::::::::::::
XP_016 MLNKSGESRYPALFPVLGGSSMSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB0 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
70 80 90 100 110 120
100 110 120 130 140
pF1KB0 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
130 140 150 160
>>XP_011527447 (OMIM: 612489) PREDICTED: RING finger pro (169 aa)
initn: 1054 init1: 1054 opt: 1054 Z-score: 1089.7 bits: 207.8 E(85289): 5.9e-54
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:22-169)
10 20 30
pF1KB0 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
:::::::::::::::::::::::::::::::::::::::
XP_011 MLNKSGESRYPALFPVLGGSSMSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB0 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
70 80 90 100 110 120
100 110 120 130 140
pF1KB0 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
130 140 150 160
>>XP_016883110 (OMIM: 612489) PREDICTED: RING finger pro (169 aa)
initn: 1054 init1: 1054 opt: 1054 Z-score: 1089.7 bits: 207.8 E(85289): 5.9e-54
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:22-169)
10 20 30
pF1KB0 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
:::::::::::::::::::::::::::::::::::::::
XP_016 MLNKSGESRYPALFPVLGGSSMSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB0 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
70 80 90 100 110 120
100 110 120 130 140
pF1KB0 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
130 140 150 160
>>XP_016883111 (OMIM: 612489) PREDICTED: RING finger pro (137 aa)
initn: 725 init1: 725 opt: 725 Z-score: 755.2 bits: 145.6 E(85289): 2.5e-35
Smith-Waterman score: 725; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:22-124)
10 20 30
pF1KB0 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
:::::::::::::::::::::::::::::::::::::::
XP_016 MLNKSGESRYPALFPVLGGSSMSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB0 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
70 80 90 100 110 120
100 110 120 130 140
pF1KB0 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
::::
XP_016 FHRKAVPDKLDGFMIGL
130
>>XP_011527449 (OMIM: 612489) PREDICTED: RING finger pro (137 aa)
initn: 725 init1: 725 opt: 725 Z-score: 755.2 bits: 145.6 E(85289): 2.5e-35
Smith-Waterman score: 725; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:22-124)
10 20 30
pF1KB0 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
:::::::::::::::::::::::::::::::::::::::
XP_011 MLNKSGESRYPALFPVLGGSSMSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB0 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHELCAVCLEDFKPRDELGICPCKHA
70 80 90 100 110 120
100 110 120 130 140
pF1KB0 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV
::::
XP_011 FHRKAVPDKLDGFMIGL
130
148 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:19:45 2016 done: Sat Nov 5 17:19:46 2016
Total Scan time: 5.500 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]