FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB0941, 169 aa 1>>>pF1KB0941 169 - 169 aa - 169 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5225+/-0.000746; mu= 7.3494+/- 0.045 mean_var=98.2906+/-19.873, 0's: 0 Z-trim(111.3): 13 B-trim: 2 in 1/50 Lambda= 0.129365 statistics sampled from 12219 (12232) to 12219 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.376), width: 16 Scan time: 1.980 The best scores are: opt bits E(32554) CCDS44048.2 PRDM16 gene_id:63976|Hs108|chr1 (1257) 437 91.4 2.1e-18 CCDS41236.2 PRDM16 gene_id:63976|Hs108|chr1 (1276) 437 91.4 2.1e-18 >>CCDS44048.2 PRDM16 gene_id:63976|Hs108|chr1 (1257 aa) initn: 447 init1: 392 opt: 437 Z-score: 444.1 bits: 91.4 E(32554): 2.1e-18 Smith-Waterman score: 437; 52.3% identity (75.8% similar) in 132 aa overlap (1-125:1-129) 10 20 30 40 50 pF1KB0 MRSKGRARKLATNNECVYGNYPEIPLEEM-------PDADGVASTPSLNIQEPCSPATSS ::::.:::::: .. : .:. : : ... .:. : .: . . : :: .: CCDS44 MRSKARARKLAKSDGDVVNNMYE-PNRDLLASHSAEDEAEDSAMSP-IPVGPP-SPFPTS 10 20 30 40 50 60 70 80 90 100 110 pF1KB0 EAFTPKEGSPYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQ : :::::::::.::.:::.::::::.::::::..::::::.:.:::.:.::..:: : CCDS44 EDFTPKEGSPYEAPVYIPEDIPIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCVVVP 60 70 80 90 100 110 120 130 140 150 160 pF1KB0 RSNLKDSSYGWEVHLPRSRRVSVHSWLYLGKRSSDVGIAFSQADVYMPGLQCAFLS :. :....::: CCDS44 RAAAKETDFGWEQILTDVEVSPQEGCITKISEDLGSEKFCVDANQAGAGSWLKYIRVACS 120 130 140 150 160 170 >>CCDS41236.2 PRDM16 gene_id:63976|Hs108|chr1 (1276 aa) initn: 447 init1: 392 opt: 437 Z-score: 444.0 bits: 91.4 E(32554): 2.1e-18 Smith-Waterman score: 437; 52.3% identity (75.8% similar) in 132 aa overlap (1-125:1-129) 10 20 30 40 50 pF1KB0 MRSKGRARKLATNNECVYGNYPEIPLEEM-------PDADGVASTPSLNIQEPCSPATSS ::::.:::::: .. : .:. : : ... .:. : .: . . : :: .: CCDS41 MRSKARARKLAKSDGDVVNNMYE-PNRDLLASHSAEDEAEDSAMSP-IPVGPP-SPFPTS 10 20 30 40 50 60 70 80 90 100 110 pF1KB0 EAFTPKEGSPYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQ : :::::::::.::.:::.::::::.::::::..::::::.:.:::.:.::..:: : CCDS41 EDFTPKEGSPYEAPVYIPEDIPIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCVVVP 60 70 80 90 100 110 120 130 140 150 160 pF1KB0 RSNLKDSSYGWEVHLPRSRRVSVHSWLYLGKRSSDVGIAFSQADVYMPGLQCAFLS :. :....::: CCDS41 RAAAKETDFGWEQILTDVEVSPQEGCITKISEDLGSEKFCVDANQAGAGSWLKYIRVACS 120 130 140 150 160 170 169 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 17:22:32 2016 done: Sat Nov 5 17:22:33 2016 Total Scan time: 1.980 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]