FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0941, 169 aa
  1>>>pF1KB0941 169 - 169 aa - 169 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5225+/-0.000746; mu= 7.3494+/- 0.045
 mean_var=98.2906+/-19.873, 0's: 0 Z-trim(111.3): 13  B-trim: 2 in 1/50
 Lambda= 0.129365
 statistics sampled from 12219 (12232) to 12219 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.376), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS44048.2 PRDM16 gene_id:63976|Hs108|chr1        (1257)  437 91.4 2.1e-18
CCDS41236.2 PRDM16 gene_id:63976|Hs108|chr1        (1276)  437 91.4 2.1e-18


>>CCDS44048.2 PRDM16 gene_id:63976|Hs108|chr1             (1257 aa)
 initn: 447 init1: 392 opt: 437  Z-score: 444.1  bits: 91.4 E(32554): 2.1e-18
Smith-Waterman score: 437; 52.3% identity (75.8% similar) in 132 aa overlap (1-125:1-129)

               10        20               30        40        50   
pF1KB0 MRSKGRARKLATNNECVYGNYPEIPLEEM-------PDADGVASTPSLNIQEPCSPATSS
       ::::.:::::: ..  : .:. : : ...        .:.  : .: . .  : ::  .:
CCDS44 MRSKARARKLAKSDGDVVNNMYE-PNRDLLASHSAEDEAEDSAMSP-IPVGPP-SPFPTS
               10        20         30        40         50        

            60        70        80        90       100       110   
pF1KB0 EAFTPKEGSPYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQ
       : :::::::::.::.:::.::::::.::::::..::::::.:.:::.:.::..:: :   
CCDS44 EDFTPKEGSPYEAPVYIPEDIPIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCVVVP
        60        70        80        90       100       110       

           120       130       140       150       160             
pF1KB0 RSNLKDSSYGWEVHLPRSRRVSVHSWLYLGKRSSDVGIAFSQADVYMPGLQCAFLS    
       :.  :....:::                                                
CCDS44 RAAAKETDFGWEQILTDVEVSPQEGCITKISEDLGSEKFCVDANQAGAGSWLKYIRVACS
       120       130       140       150       160       170       

>>CCDS41236.2 PRDM16 gene_id:63976|Hs108|chr1             (1276 aa)
 initn: 447 init1: 392 opt: 437  Z-score: 444.0  bits: 91.4 E(32554): 2.1e-18
Smith-Waterman score: 437; 52.3% identity (75.8% similar) in 132 aa overlap (1-125:1-129)

               10        20               30        40        50   
pF1KB0 MRSKGRARKLATNNECVYGNYPEIPLEEM-------PDADGVASTPSLNIQEPCSPATSS
       ::::.:::::: ..  : .:. : : ...        .:.  : .: . .  : ::  .:
CCDS41 MRSKARARKLAKSDGDVVNNMYE-PNRDLLASHSAEDEAEDSAMSP-IPVGPP-SPFPTS
               10        20         30        40         50        

            60        70        80        90       100       110   
pF1KB0 EAFTPKEGSPYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQ
       : :::::::::.::.:::.::::::.::::::..::::::.:.:::.:.::..:: :   
CCDS41 EDFTPKEGSPYEAPVYIPEDIPIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCVVVP
        60        70        80        90       100       110       

           120       130       140       150       160             
pF1KB0 RSNLKDSSYGWEVHLPRSRRVSVHSWLYLGKRSSDVGIAFSQADVYMPGLQCAFLS    
       :.  :....:::                                                
CCDS41 RAAAKETDFGWEQILTDVEVSPQEGCITKISEDLGSEKFCVDANQAGAGSWLKYIRVACS
       120       130       140       150       160       170       




169 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:22:32 2016 done: Sat Nov  5 17:22:33 2016
 Total Scan time:  1.980 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]