FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0942, 392 aa
  1>>>pF1KB0942 392 - 392 aa - 392 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9928+/-0.00103; mu= 9.4501+/- 0.061
 mean_var=142.6386+/-28.798, 0's: 0 Z-trim(108.1): 133  B-trim: 0 in 0/53
 Lambda= 0.107388
 statistics sampled from 9818 (9971) to 9818 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.306), width:  16
 Scan time:  2.900

The best scores are:                                      opt bits E(32554)
CCDS34339.1 PAK1IP1 gene_id:55003|Hs108|chr6       ( 392) 2605 415.4 4.4e-116


>>CCDS34339.1 PAK1IP1 gene_id:55003|Hs108|chr6            (392 aa)
 initn: 2605 init1: 2605 opt: 2605  Z-score: 2197.5  bits: 415.4 E(32554): 4.4e-116
Smith-Waterman score: 2605; 100.0% identity (100.0% similar) in 392 aa overlap (1-392:1-392)

               10        20        30        40        50        60
pF1KB0 MELVAGCYEQVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNSRFVVTGSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MELVAGCYEQVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNSRFVVTGSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 DETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLKSIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLKSIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQYV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 VIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLCE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 FKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 VWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTGDSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTGDSKK
              310       320       330       340       350       360

              370       380       390  
pF1KB0 ATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ
       ::::::::::::::::::::::::::::::::
CCDS34 ATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ
              370       380       390  




392 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:23:15 2016 done: Sat Nov  5 17:23:15 2016
 Total Scan time:  2.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]