Result of FASTA (omim) for
pF1KB0942
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0942, 392 aa
1>>>pF1KB0942 392 - 392 aa - 392 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7762+/-0.000414; mu= 11.0795+/- 0.026
mean_var=166.4084+/-34.758, 0's: 0 Z-trim(115.5): 266 B-trim: 1159 in 1/55
Lambda= 0.099423
statistics sampled from 25611 (25956) to 25611 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.304), width: 16
Scan time: 8.940
The best scores are: opt bits E(85289)
NP_060376 (OMIM: 607811) p21-activated protein kin ( 392) 2605 386.0 8.1e-107
XP_005249261 (OMIM: 607811) PREDICTED: p21-activat ( 393) 2593 384.3 2.7e-106
XP_011513022 (OMIM: 607811) PREDICTED: p21-activat ( 415) 2405 357.4 3.6e-98
XP_011513023 (OMIM: 607811) PREDICTED: p21-activat ( 414) 2401 356.8 5.4e-98
NP_060058 (OMIM: 609012) WD repeat-containing prot ( 334) 264 50.2 8.8e-06
XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-c ( 334) 264 50.2 8.8e-06
NP_438172 (OMIM: 609012) WD repeat-containing prot ( 334) 264 50.2 8.8e-06
XP_011531865 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 232 45.4 0.00017
XP_011531866 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 232 45.4 0.00017
XP_011531867 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 232 45.4 0.00017
XP_011531864 (OMIM: 614783,614813) PREDICTED: POC1 ( 300) 230 45.3 0.00024
XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 ( 321) 230 45.3 0.00025
XP_011531863 (OMIM: 614783,614813) PREDICTED: POC1 ( 326) 230 45.3 0.00025
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359) 230 45.3 0.00027
NP_001155053 (OMIM: 614783,614813) POC1 centriolar ( 369) 230 45.3 0.00028
XP_011531862 (OMIM: 614783,614813) PREDICTED: POC1 ( 374) 230 45.4 0.00028
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407) 230 45.4 0.00029
NP_001269467 (OMIM: 139380,613065,616973) guanine ( 240) 224 44.3 0.00037
XP_016856549 (OMIM: 139380,613065,616973) PREDICTE ( 340) 224 44.4 0.00047
NP_002065 (OMIM: 139380,613065,616973) guanine nuc ( 340) 224 44.4 0.00047
XP_016856548 (OMIM: 139380,613065,616973) PREDICTE ( 340) 224 44.4 0.00047
XP_016856550 (OMIM: 139380,613065,616973) PREDICTE ( 340) 224 44.4 0.00047
NP_001269468 (OMIM: 139380,613065,616973) guanine ( 340) 224 44.4 0.00047
XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540) 226 45.0 0.00053
NP_001013433 (OMIM: 606278) F-box/WD repeat-contai ( 589) 226 45.0 0.00056
NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627) 226 45.0 0.00059
XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 226 45.1 0.00062
XP_011530389 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 226 45.1 0.00062
XP_011530385 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 226 45.1 0.00064
XP_016863851 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 226 45.1 0.00064
NP_361014 (OMIM: 606278) F-box/WD repeat-containin ( 707) 226 45.1 0.00064
XP_011530387 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 226 45.1 0.00064
XP_011530386 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 226 45.1 0.00064
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 222 44.5 0.0009
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 222 44.5 0.0009
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 222 44.5 0.0009
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 222 44.5 0.0009
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672) 222 44.5 0.00091
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672) 222 44.5 0.00091
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672) 222 44.5 0.00091
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675) 222 44.5 0.00092
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675) 222 44.5 0.00092
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675) 222 44.5 0.00092
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675) 222 44.5 0.00092
NP_006373 (OMIM: 604596) CMT1A duplicated region t ( 752) 216 43.7 0.0018
NP_001246 (OMIM: 603618) cell division cycle prote ( 499) 213 43.1 0.0018
XP_011535412 (OMIM: 601686) PREDICTED: telomerase (2104) 220 44.7 0.0024
XP_016863001 (OMIM: 606990) PREDICTED: coatomer su ( 877) 213 43.3 0.0027
NP_001305964 (OMIM: 601686) telomerase protein com (2519) 220 44.8 0.0027
NP_004757 (OMIM: 606990) coatomer subunit beta' [H ( 906) 213 43.3 0.0027
>>NP_060376 (OMIM: 607811) p21-activated protein kinase- (392 aa)
initn: 2605 init1: 2605 opt: 2605 Z-score: 2038.7 bits: 386.0 E(85289): 8.1e-107
Smith-Waterman score: 2605; 100.0% identity (100.0% similar) in 392 aa overlap (1-392:1-392)
10 20 30 40 50 60
pF1KB0 MELVAGCYEQVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNSRFVVTGSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MELVAGCYEQVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNSRFVVTGSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 DETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLKSIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLKSIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 AHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQYV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 VIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLCE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 FKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCLG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 VWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTGDSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTGDSKK
310 320 330 340 350 360
370 380 390
pF1KB0 ATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ
::::::::::::::::::::::::::::::::
NP_060 ATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ
370 380 390
>>XP_005249261 (OMIM: 607811) PREDICTED: p21-activated p (393 aa)
initn: 2401 init1: 2401 opt: 2593 Z-score: 2029.4 bits: 384.3 E(85289): 2.7e-106
Smith-Waterman score: 2593; 99.7% identity (99.7% similar) in 393 aa overlap (1-392:1-393)
10 20 30 40 50
pF1KB0 MELVAGCYEQVLFGFAVHPEPEACGDHEQ-WTLVADFTHHAHTASLSAVAVNSRFVVTGS
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_005 MELVAGCYEQVLFGFAVHPEPEACGDHEQQWTLVADFTHHAHTASLSAVAVNSRFVVTGS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 KDETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KDETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLKSI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 KAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQY
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 VVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLC
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 EFKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EFKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLTCL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 GVWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTGDSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTGDSK
310 320 330 340 350 360
360 370 380 390
pF1KB0 KATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ
:::::::::::::::::::::::::::::::::
XP_005 KATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ
370 380 390
>>XP_011513022 (OMIM: 607811) PREDICTED: p21-activated p (415 aa)
initn: 2402 init1: 2402 opt: 2405 Z-score: 1883.4 bits: 357.4 E(85289): 3.6e-98
Smith-Waterman score: 2405; 95.3% identity (96.9% similar) in 387 aa overlap (6-392:31-415)
10 20 30
pF1KB0 MELVAGCYEQVLFGFAVHPEPEACGDHEQWTLVAD
: : .:: .: . . ..:::::::
XP_011 MLSSNPVKQYLNCSRTSRRQNPSASEFKKEGLYSAGIFG-KTHVSNNQ-APQQQWTLVAD
10 20 30 40 50
40 50 60 70 80 90
pF1KB0 FTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRH
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB0 LISGAEDGLICIWDAKKWECLKSIKAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LISGAEDGLICIWDAKKWECLKSIKAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEG
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB0 RSAFIKNIKQNAHIVEWSPRGEQYVVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSAFIKNIKQNAHIVEWSPRGEQYVVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSE
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB0 SVLAVAGDEEVIRFFDCDSLVCLCEFKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVLAVAGDEEVIRFFDCDSLVCLCEFKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWK
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB0 LKQDKKVPPSLLCEINTNARLTCLGVWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKQDKKVPPSLLCEINTNARLTCLGVWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPG
300 310 320 330 340 350
340 350 360 370 380 390
pF1KB0 DTVHKEEKRSKPNTKKRGLTGDSKKATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTVHKEEKRSKPNTKKRGLTGDSKKATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ
360 370 380 390 400 410
>>XP_011513023 (OMIM: 607811) PREDICTED: p21-activated p (414 aa)
initn: 2401 init1: 2401 opt: 2401 Z-score: 1880.3 bits: 356.8 E(85289): 5.4e-98
Smith-Waterman score: 2401; 99.7% identity (100.0% similar) in 365 aa overlap (28-392:50-414)
10 20 30 40 50
pF1KB0 MELVAGCYEQVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNSRFVVT
.:::::::::::::::::::::::::::::
XP_011 QNPSASEFKKEGLYSAGIFGKTHVSNNQAPQQWTLVADFTHHAHTASLSAVAVNSRFVVT
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB0 GSKDETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSKDETIHIYDMKKKIEHGALVHHSGTITCLKFYGNRHLISGAEDGLICIWDAKKWECLK
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB0 SIKAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIKAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGE
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB0 QYVVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QYVVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVC
200 210 220 230 240 250
240 250 260 270 280 290
pF1KB0 LCEFKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LCEFKAHENRVKDMFSFEIPEHHVIVSASSDGFIKMWKLKQDKKVPPSLLCEINTNARLT
260 270 280 290 300 310
300 310 320 330 340 350
pF1KB0 CLGVWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLGVWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTGD
320 330 340 350 360 370
360 370 380 390
pF1KB0 SKKATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ
:::::::::::::::::::::::::::::::::::
XP_011 SKKATKESGLISTKKRKMVEMLEKKRKKKKIKTMQ
380 390 400 410
>>NP_060058 (OMIM: 609012) WD repeat-containing protein (334 aa)
initn: 148 init1: 148 opt: 264 Z-score: 224.8 bits: 50.2 E(85289): 8.8e-06
Smith-Waterman score: 267; 26.1% identity (61.8% similar) in 249 aa overlap (41-275:86-331)
20 30 40 50 60
pF1KB0 VLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVA--VNSRFVVTGSKDETIHIYD
: ..: :: .: ..:..: :.:..:.:
NP_060 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD
60 70 80 90 100 110
70 80 90 100 110 120
pF1KB0 MKKKIEHGALVHHSGTITCLKFYGNRHLI-SGAEDGLICIWDAKKWECLKSIKAHKGQVT
... .: ::. . : .: . .:: ::. : . :::.: .:::.. ::. :.
NP_060 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS
120 130 140 150 160 170
130 140 150 160 170 180
pF1KB0 FLSIHPSGKLALSVGTDKTLRTWNLVEGR--SAFIKNIKQNAHIVEWSPRGEQYVVI--I
. .. .:.: .: . : : :. . :. ...: . . . .:..:: : .:.. .
NP_060 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATL
180 190 200 210 220 230
190 200 210 220 230
pF1KB0 QNKIDIYQLDTASISGTITNEKRISSVKFLSESVLA----VAGDEE-VIRFFDCDSLVCL
.: . ... . .. : :..: . : . :: . :.:.:. .. ... .. .
NP_060 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB0 CEFKAHENRVKDMFSFEIPEHHVIVSAS--SDGFIKMWKLKQDKKVPPSLLCEINTNARL
....: . : . . : ...:.::. .: ::.::
NP_060 QKLQGHTDVV--ISTACHPTENIIASAALENDKTIKLWKSDC
300 310 320 330
300 310 320 330 340 350
pF1KB0 TCLGVWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTG
>>XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-conta (334 aa)
initn: 148 init1: 148 opt: 264 Z-score: 224.8 bits: 50.2 E(85289): 8.8e-06
Smith-Waterman score: 267; 26.1% identity (61.8% similar) in 249 aa overlap (41-275:86-331)
20 30 40 50 60
pF1KB0 VLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVA--VNSRFVVTGSKDETIHIYD
: ..: :: .: ..:..: :.:..:.:
XP_005 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD
60 70 80 90 100 110
70 80 90 100 110 120
pF1KB0 MKKKIEHGALVHHSGTITCLKFYGNRHLI-SGAEDGLICIWDAKKWECLKSIKAHKGQVT
... .: ::. . : .: . .:: ::. : . :::.: .:::.. ::. :.
XP_005 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS
120 130 140 150 160 170
130 140 150 160 170 180
pF1KB0 FLSIHPSGKLALSVGTDKTLRTWNLVEGR--SAFIKNIKQNAHIVEWSPRGEQYVVI--I
. .. .:.: .: . : : :. . :. ...: . . . .:..:: : .:.. .
XP_005 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATL
180 190 200 210 220 230
190 200 210 220 230
pF1KB0 QNKIDIYQLDTASISGTITNEKRISSVKFLSESVLA----VAGDEE-VIRFFDCDSLVCL
.: . ... . .. : :..: . : . :: . :.:.:. .. ... .. .
XP_005 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB0 CEFKAHENRVKDMFSFEIPEHHVIVSAS--SDGFIKMWKLKQDKKVPPSLLCEINTNARL
....: . : . . : ...:.::. .: ::.::
XP_005 QKLQGHTDVV--ISTACHPTENIIASAALENDKTIKLWKSDC
300 310 320 330
300 310 320 330 340 350
pF1KB0 TCLGVWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTG
>>NP_438172 (OMIM: 609012) WD repeat-containing protein (334 aa)
initn: 148 init1: 148 opt: 264 Z-score: 224.8 bits: 50.2 E(85289): 8.8e-06
Smith-Waterman score: 267; 26.1% identity (61.8% similar) in 249 aa overlap (41-275:86-331)
20 30 40 50 60
pF1KB0 VLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVA--VNSRFVVTGSKDETIHIYD
: ..: :: .: ..:..: :.:..:.:
NP_438 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD
60 70 80 90 100 110
70 80 90 100 110 120
pF1KB0 MKKKIEHGALVHHSGTITCLKFYGNRHLI-SGAEDGLICIWDAKKWECLKSIKAHKGQVT
... .: ::. . : .: . .:: ::. : . :::.: .:::.. ::. :.
NP_438 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS
120 130 140 150 160 170
130 140 150 160 170 180
pF1KB0 FLSIHPSGKLALSVGTDKTLRTWNLVEGR--SAFIKNIKQNAHIVEWSPRGEQYVVI--I
. .. .:.: .: . : : :. . :. ...: . . . .:..:: : .:.. .
NP_438 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATL
180 190 200 210 220 230
190 200 210 220 230
pF1KB0 QNKIDIYQLDTASISGTITNEKRISSVKFLSESVLA----VAGDEE-VIRFFDCDSLVCL
.: . ... . .. : :..: . : . :: . :.:.:. .. ... .. .
NP_438 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB0 CEFKAHENRVKDMFSFEIPEHHVIVSAS--SDGFIKMWKLKQDKKVPPSLLCEINTNARL
....: . : . . : ...:.::. .: ::.::
NP_438 QKLQGHTDVV--ISTACHPTENIIASAALENDKTIKLWKSDC
300 310 320 330
300 310 320 330 340 350
pF1KB0 TCLGVWLDKVADMKESLPPAAEPSPVSKEQSKIGKKEPGDTVHKEEKRSKPNTKKRGLTG
>>XP_011531865 (OMIM: 614783,614813) PREDICTED: POC1 cen (246 aa)
initn: 239 init1: 125 opt: 232 Z-score: 201.6 bits: 45.4 E(85289): 0.00017
Smith-Waterman score: 232; 28.8% identity (65.2% similar) in 132 aa overlap (40-168:101-230)
10 20 30 40 50 60
pF1KB0 QVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNS--RFVVTGSKDETIHIY
::::.. .: : . ::.: :.:....
XP_011 PSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVW
80 90 100 110 120 130
70 80 90 100 110 120
pF1KB0 DMKKKIEHGALVHHSGTITCLKFYGN-RHLISGAEDGLICIWDAKKWECLKSIKAHKGQV
... .: .: . . : :: . : ..:...: . .:: .. ::..: : : :
XP_011 ATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFV
140 150 160 170 180 190
130 140 150 160 170 180
pF1KB0 TFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQYVVIIQNK
:....:::: ..: :.:...:.. : .... . ..:
XP_011 TYVDFHPSGTCIAAAGMDNTVKVWDVRTHR--LLQHYQWTSHHCCLFKNGGVFCFWRL
200 210 220 230 240
190 200 210 220 230 240
pF1KB0 IDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLCEFKAHEN
>>XP_011531866 (OMIM: 614783,614813) PREDICTED: POC1 cen (246 aa)
initn: 239 init1: 125 opt: 232 Z-score: 201.6 bits: 45.4 E(85289): 0.00017
Smith-Waterman score: 232; 28.8% identity (65.2% similar) in 132 aa overlap (40-168:101-230)
10 20 30 40 50 60
pF1KB0 QVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNS--RFVVTGSKDETIHIY
::::.. .: : . ::.: :.:....
XP_011 PSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVW
80 90 100 110 120 130
70 80 90 100 110 120
pF1KB0 DMKKKIEHGALVHHSGTITCLKFYGN-RHLISGAEDGLICIWDAKKWECLKSIKAHKGQV
... .: .: . . : :: . : ..:...: . .:: .. ::..: : : :
XP_011 ATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFV
140 150 160 170 180 190
130 140 150 160 170 180
pF1KB0 TFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQYVVIIQNK
:....:::: ..: :.:...:.. : .... . ..:
XP_011 TYVDFHPSGTCIAAAGMDNTVKVWDVRTHR--LLQHYQWTSHHCCLFKNGGVFCFWRL
200 210 220 230 240
190 200 210 220 230 240
pF1KB0 IDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLCEFKAHEN
>>XP_011531867 (OMIM: 614783,614813) PREDICTED: POC1 cen (246 aa)
initn: 239 init1: 125 opt: 232 Z-score: 201.6 bits: 45.4 E(85289): 0.00017
Smith-Waterman score: 232; 28.8% identity (65.2% similar) in 132 aa overlap (40-168:101-230)
10 20 30 40 50 60
pF1KB0 QVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNS--RFVVTGSKDETIHIY
::::.. .: : . ::.: :.:....
XP_011 PSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVW
80 90 100 110 120 130
70 80 90 100 110 120
pF1KB0 DMKKKIEHGALVHHSGTITCLKFYGN-RHLISGAEDGLICIWDAKKWECLKSIKAHKGQV
... .: .: . . : :: . : ..:...: . .:: .. ::..: : : :
XP_011 ATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFV
140 150 160 170 180 190
130 140 150 160 170 180
pF1KB0 TFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWSPRGEQYVVIIQNK
:....:::: ..: :.:...:.. : .... . ..:
XP_011 TYVDFHPSGTCIAAAGMDNTVKVWDVRTHR--LLQHYQWTSHHCCLFKNGGVFCFWRL
200 210 220 230 240
190 200 210 220 230 240
pF1KB0 IDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCDSLVCLCEFKAHEN
392 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:23:15 2016 done: Sat Nov 5 17:23:17 2016
Total Scan time: 8.940 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]