FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0947, 178 aa
  1>>>pF1KB0947 178 - 178 aa - 178 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0494+/-0.000679; mu= 14.3071+/- 0.041
 mean_var=63.3849+/-12.528, 0's: 0 Z-trim(109.6): 2  B-trim: 0 in 0/53
 Lambda= 0.161095
 statistics sampled from 10997 (10999) to 10997 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.338), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS9146.1 ARPC3 gene_id:10094|Hs108|chr12         ( 178) 1216 290.6 3.5e-79


>>CCDS9146.1 ARPC3 gene_id:10094|Hs108|chr12              (178 aa)
 initn: 1216 init1: 1216 opt: 1216  Z-score: 1535.0  bits: 290.6 E(32554): 3.5e-79
Smith-Waterman score: 1216; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KB0 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP
               70        80        90       100       110       120

              130       140       150       160       170        
pF1KB0 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ
              130       140       150       160       170        




178 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:59:57 2016 done: Sat Nov  5 17:59:58 2016
 Total Scan time:  1.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]