FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0949, 180 aa
  1>>>pF1KB0949 180 - 180 aa - 180 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5743+/-0.000276; mu= 13.6992+/- 0.017
 mean_var=118.4478+/-22.907, 0's: 0 Z-trim(122.3): 8  B-trim: 0 in 0/55
 Lambda= 0.117845
 statistics sampled from 40245 (40258) to 40245 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.472), width:  16
 Scan time:  6.160

The best scores are:                                      opt bits E(85289)
NP_004330 (OMIM: 603784) pituitary tumor-transform ( 180) 1269 225.4 3.9e-59
NP_001273751 (OMIM: 603784) pituitary tumor-transf ( 142)  398 77.2 1.3e-14


>>NP_004330 (OMIM: 603784) pituitary tumor-transforming   (180 aa)
 initn: 1269 init1: 1269 opt: 1269  Z-score: 1182.7  bits: 225.4 E(85289): 3.9e-59
Smith-Waterman score: 1269; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB0 MAPGVARGPTPYWRLRLGGAALLLLLIPVAAAQEPPGAACSQNTNKTCEECLKNVSCLWC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAPGVARGPTPYWRLRLGGAALLLLLIPVAAAQEPPGAACSQNTNKTCEECLKNVSCLWC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 NTNKACLDYPVTSVLPPASLCKLSSARWGVCWVNFEALIITMSVVGGTLLLGIAICCCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NTNKACLDYPVTSVLPPASLCKLSSARWGVCWVNFEALIITMSVVGGTLLLGIAICCCCC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 CRRKRSRKPDRSEEKAMREREERRIRQEERRAEMKTRHDEIRKKYGLFKEENPYARFENN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CRRKRSRKPDRSEEKAMREREERRIRQEERRAEMKTRHDEIRKKYGLFKEENPYARFENN
              130       140       150       160       170       180

>>NP_001273751 (OMIM: 603784) pituitary tumor-transformi  (142 aa)
 initn: 385 init1: 385 opt: 398  Z-score: 383.6  bits: 77.2 E(85289): 1.3e-14
Smith-Waterman score: 398; 74.7% identity (82.8% similar) in 87 aa overlap (1-83:1-85)

               10        20        30        40        50          
pF1KB0 MAPGVARGPTPYWRLRLGGAALLLLLIPVAAAQEPPGAACSQNTNKTCEECLKNVS-CLW
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: 
NP_001 MAPGVARGPTPYWRLRLGGAALLLLLIPVAAAQEPPGAACSQNTNKTCEECLKNVSACLK
               10        20        30        40        50        60

      60        70           80        90       100       110      
pF1KB0 CNTNKACLDYPVTSVLP---PASLCKLSSARWGVCWVNFEALIITMSVVGGTLLLGIAIC
        .:    ::  .:..:    : . :..                                 
NP_001 KKTRM--LDLKTTKALQHISPDASCEVHAPQPSPAGRPRGHCGLLTLASEPASLPGQAAG
                 70        80        90       100       110        




180 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:25:05 2016 done: Sat Nov  5 17:25:06 2016
 Total Scan time:  6.160 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]