Result of FASTA (ccds) for
pF1KB0953
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0953, 184 aa
1>>>pF1KB0953 184 - 184 aa - 184 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3215+/-0.000891; mu= 12.7735+/- 0.054
mean_var=77.7306+/-16.761, 0's: 0 Z-trim(107.1): 151 B-trim: 647 in 2/48
Lambda= 0.145472
statistics sampled from 9215 (9398) to 9215 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.289), width: 16
Scan time: 1.970
The best scores are: opt bits E(32554)
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 1218 264.8 2.1e-71
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 ( 157) 748 166.1 9.4e-42
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 663 148.3 2.5e-36
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 561 126.9 6.8e-30
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 553 125.2 2.2e-29
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 547 124.0 5.2e-29
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 547 124.0 5.2e-29
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 528 120.0 8.1e-28
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 498 113.7 6.5e-26
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 489 111.8 2.4e-25
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 495 113.4 2.5e-25
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 484 110.7 5e-25
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 476 109.1 1.7e-24
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 452 104.0 5.6e-23
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 449 103.8 2e-22
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 418 97.2 1.7e-20
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 414 96.3 2.6e-20
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 404 94.0 5.8e-20
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 398 92.6 1.1e-19
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 391 91.3 4.1e-19
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 387 90.4 7e-19
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 385 89.9 7.2e-19
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 387 90.4 7.3e-19
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 381 89.1 1.6e-18
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 381 89.2 1.7e-18
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 367 86.2 1.3e-17
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 365 85.8 1.7e-17
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 364 85.6 2.1e-17
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 349 82.4 1.6e-16
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 323 77.0 8.1e-15
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 313 74.9 3.4e-14
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 302 72.5 1.4e-13
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 298 71.7 3e-13
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 298 71.8 3.6e-13
CCDS55463.1 ARL13A gene_id:392509|Hs108|chrX ( 256) 280 68.0 5.1e-12
>>CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 (184 aa)
initn: 1218 init1: 1218 opt: 1218 Z-score: 1395.2 bits: 264.8 E(32554): 2.1e-71
Smith-Waterman score: 1218; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)
10 20 30 40 50 60
pF1KB0 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 LIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
130 140 150 160 170 180
pF1KB0 FTAD
::::
CCDS80 FTAD
>>CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 (157 aa)
initn: 766 init1: 748 opt: 748 Z-score: 863.1 bits: 166.1 E(32554): 9.4e-42
Smith-Waterman score: 990; 85.3% identity (85.3% similar) in 184 aa overlap (1-184:1-157)
10 20 30 40 50 60
pF1KB0 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE-------
70 80 90 100 110
130 140 150 160 170 180
pF1KB0 LIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
::::::::::::::::::::::::::::::::::::::::
CCDS55 --------------------VLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
120 130 140 150
pF1KB0 FTAD
::::
CCDS55 FTAD
>>CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 (182 aa)
initn: 635 init1: 594 opt: 663 Z-score: 765.8 bits: 148.3 E(32554): 2.5e-36
Smith-Waterman score: 663; 53.3% identity (83.9% similar) in 180 aa overlap (1-179:1-180)
10 20 30 40 50
pF1KB0 MGLLTILKKMKQK-ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRG
::::.::.:.:. ..:.:.:.::::::::::.::.. .:::. :.:: :::::... .:
CCDS75 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT
::::.::.:::...: ::.::::.:: ::.:.:::::.:... .:: :: ::.:. .
CCDS75 FKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 LLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR
.::::::::: : .. : : :.: .::.. : ::.:::.:::.. :..:. .....
CCDS75 VLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK
130 140 150 160 170 180
180
pF1KB0 IFTAD
CCDS75 KK
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 533 init1: 533 opt: 561 Z-score: 650.1 bits: 126.9 E(32554): 6.8e-30
Smith-Waterman score: 561; 47.4% identity (82.9% similar) in 175 aa overlap (6-179:8-180)
10 20 30 40 50
pF1KB0 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLGFNIKTLEH
.::.. : .:.:.::.::: ::::::: :.. :: . :: ::.:::..:.:.
CCDS87 MGNIFGNLLKSLIGK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG
.......:::::: ..: ::.::..:.:::.:::: ::.:... ..::. .:.:..:
CCDS87 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 ATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDIS
:.::.::::::::.:... : . : : :.: ..: ::. :..:..: :.::: ....
CCDS87 AVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLK
120 130 140 150 160 170
180
pF1KB0 SRIFTAD
..
CCDS87 NKK
180
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 529 init1: 529 opt: 553 Z-score: 641.1 bits: 125.2 E(32554): 2.2e-29
Smith-Waterman score: 553; 47.9% identity (83.2% similar) in 167 aa overlap (14-179:15-180)
10 20 30 40 50
pF1KB0 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLGFNIKTLEHR
..:.:.::.::: ::::::: :.. :: . :: ::.:::..:.:..
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYK
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA
......:::::: ..: ::.::..:.:::.:::: ::.:... ..::. .:.:..: :
CCDS15 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 TLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISS
.::.::::::::.:... : . : : :.: ..: ::. :..:..: :.::: ... .
CCDS15 VLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN
120 130 140 150 160 170
180
pF1KB0 RIFTAD
.
CCDS15 QK
180
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 546 init1: 527 opt: 547 Z-score: 634.3 bits: 124.0 E(32554): 5.2e-29
Smith-Waterman score: 547; 47.9% identity (79.6% similar) in 167 aa overlap (14-179:15-180)
10 20 30 40 50
pF1KB0 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLGFNIKTLEHR
....:.::.::: ::::::: :.. :: . :: ::.:::..:.:..
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYK
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA
.. ...:::::: ..: ::.::..:.:::.:::: ::.:.:. :::..: :..: :
CCDS34 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 TLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISS
.::.::::::.:.:. . . . : :. .::. : .:. :. : .: :.::: ..:.
CCDS34 VLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK
120 130 140 150 160 170
180
pF1KB0 RIFTAD
:
CCDS34 R
180
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 547 init1: 524 opt: 547 Z-score: 634.3 bits: 124.0 E(32554): 5.2e-29
Smith-Waterman score: 547; 45.6% identity (79.1% similar) in 182 aa overlap (1-179:1-180)
10 20 30 40 50
pF1KB0 MGLL--TILKKMKQKERELRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLGFNIKTLEH
::: ...... : ...:.::.::: ::::::: :.. :: . :: ::.:::..:.:.
CCDS28 MGLTISSLFSRLFGK-KQMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG
... ...:::::: .: :..::..:.:::.:::: ::.:.:. :::..:. ..:
CCDS28 KNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 ATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDIS
:.::.::::::::.:.. . . . : :.:.:.. : .:. :. : .: :.::: ...:
CCDS28 AVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELS
120 130 140 150 160 170
180
pF1KB0 SRIFTAD
.:
CCDS28 KR
180
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 519 init1: 495 opt: 528 Z-score: 612.9 bits: 120.0 E(32554): 8.1e-28
Smith-Waterman score: 528; 46.7% identity (79.4% similar) in 165 aa overlap (15-178:12-175)
10 20 30 40 50
pF1KB0 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLGFNIKTLEHRG
.:.:.:::::: ::::::: :.. :... :: ::.:::..:. ...
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKN
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT
:.:.:::::: ..: ::.:. .:.:::.::: :::.:... ..::. .. .... :
CCDS96 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 LLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR
.:::::::::: :.. . :.: : : ::...: .: :..:..: :. :: .. .:
CCDS96 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
120 130 140 150 160 170
180
pF1KB0 IFTAD
>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa)
initn: 495 init1: 495 opt: 498 Z-score: 578.7 bits: 113.7 E(32554): 6.5e-26
Smith-Waterman score: 498; 45.2% identity (78.3% similar) in 166 aa overlap (15-179:16-180)
10 20 30 40 50
pF1KB0 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLGFNIKTLEHR
::.:.:.::::.::::::: ... :: . :: ::.:::..:. ..
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNVETVTYK
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA
..:...::.::: :.: ::: :. .::..:.:::: ::.:. . :: ..: ::.: :
CCDS44 NLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 TLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISS
:..::::::. :..:. . . : : ......: : ::. : .: ...::.. ..:
CCDS44 ILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS
120 130 140 150 160 170
180
pF1KB0 RIFTAD
:
CCDS44 RQ
180
>>CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 (179 aa)
initn: 489 init1: 489 opt: 489 Z-score: 568.5 bits: 111.8 E(32554): 2.4e-25
Smith-Waterman score: 489; 43.6% identity (74.5% similar) in 165 aa overlap (15-179:15-179)
10 20 30 40 50 60
pF1KB0 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
.: .....::::::::::: .: ... :::.: :.. . ..
CCDS71 MGLIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL
.. .::.:::.:::: : .:. .:. .: :::: ::.:. ..:: .:..: : :..
CCDS71 HFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 LIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
::::::::. : ... : . : :.::..: : ::.: :.:::.: :..:. . :. :
CCDS71 LIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
130 140 150 160 170
pF1KB0 FTAD
184 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:27:18 2016 done: Sat Nov 5 17:27:19 2016
Total Scan time: 1.970 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]