FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0955, 187 aa
  1>>>pF1KB0955 187 - 187 aa - 187 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2302+/-0.000739; mu= 5.4336+/- 0.045
 mean_var=128.2751+/-25.134, 0's: 0 Z-trim(113.5): 8  B-trim: 0 in 0/51
 Lambda= 0.113241
 statistics sampled from 14108 (14111) to 14108 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.433), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS53941.1 EID1 gene_id:23741|Hs108|chr15         ( 187) 1248 214.0 4.5e-56


>>CCDS53941.1 EID1 gene_id:23741|Hs108|chr15              (187 aa)
 initn: 1248 init1: 1248 opt: 1248  Z-score: 1120.2  bits: 214.0 E(32554): 4.5e-56
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)

               10        20        30        40        50        60
pF1KB0 MSEMAELSELYEESSDLQMDVMPGEGDLPQMEVGSGSRELSLRPSRSGAQQLEEEGPMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSEMAELSELYEESSDLQMDVMPGEGDLPQMEVGSGSRELSLRPSRSGAQQLEEEGPMEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 EEAQPMAAPEGKRSLANGPNAGEQPGQVAGADFESEDEGEEFDDWEDDYDYPEEEQLSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EEAQPMAAPEGKRSLANGPNAGEQPGQVAGADFESEDEGEEFDDWEDDYDYPEEEQLSGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 GYRVSAALEEADKMFLRTREPALDGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTEELGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GYRVSAALEEADKMFLRTREPALDGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTEELGC
              130       140       150       160       170       180

              
pF1KB0 DEIIDRE
       :::::::
CCDS53 DEIIDRE
              




187 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:28:07 2016 done: Sat Nov  5 17:28:07 2016
 Total Scan time:  2.270 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]