FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0955, 187 aa
  1>>>pF1KB0955 187 - 187 aa - 187 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2886+/-0.000302; mu= 4.7562+/- 0.019
 mean_var=124.7804+/-24.420, 0's: 0 Z-trim(120.6): 3  B-trim: 1875 in 2/55
 Lambda= 0.114816
 statistics sampled from 36098 (36102) to 36098 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.423), width:  16
 Scan time:  6.680

The best scores are:                                      opt bits E(85289)
NP_055150 (OMIM: 605894) EP300-interacting inhibit ( 187) 1248 216.8 1.6e-56


>>NP_055150 (OMIM: 605894) EP300-interacting inhibitor o  (187 aa)
 initn: 1248 init1: 1248 opt: 1248  Z-score: 1135.5  bits: 216.8 E(85289): 1.6e-56
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)

               10        20        30        40        50        60
pF1KB0 MSEMAELSELYEESSDLQMDVMPGEGDLPQMEVGSGSRELSLRPSRSGAQQLEEEGPMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSEMAELSELYEESSDLQMDVMPGEGDLPQMEVGSGSRELSLRPSRSGAQQLEEEGPMEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 EEAQPMAAPEGKRSLANGPNAGEQPGQVAGADFESEDEGEEFDDWEDDYDYPEEEQLSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EEAQPMAAPEGKRSLANGPNAGEQPGQVAGADFESEDEGEEFDDWEDDYDYPEEEQLSGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 GYRVSAALEEADKMFLRTREPALDGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTEELGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GYRVSAALEEADKMFLRTREPALDGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTEELGC
              130       140       150       160       170       180

              
pF1KB0 DEIIDRE
       :::::::
NP_055 DEIIDRE
              




187 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:28:08 2016 done: Sat Nov  5 17:28:08 2016
 Total Scan time:  6.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]