FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0956, 418 aa
  1>>>pF1KB0956 418 - 418 aa - 418 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6213+/-0.000782; mu= 11.8464+/- 0.047
 mean_var=111.7421+/-21.396, 0's: 0 Z-trim(111.4): 6  B-trim: 12 in 1/51
 Lambda= 0.121329
 statistics sampled from 12345 (12351) to 12345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.379), width:  16
 Scan time:  2.980

The best scores are:                                      opt bits E(32554)
CCDS33221.2 SMYD5 gene_id:10322|Hs108|chr2         ( 418) 2882 515.0 5.1e-146


>>CCDS33221.2 SMYD5 gene_id:10322|Hs108|chr2              (418 aa)
 initn: 2882 init1: 2882 opt: 2882  Z-score: 2734.9  bits: 515.0 E(32554): 5.1e-146
Smith-Waterman score: 2882; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB0 MAASMCDVFSFCVGVAGRARVSVEVRFVSSAKGKGLFATQLIRKGETIFVERPLVAAQFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAASMCDVFSFCVGVAGRARVSVEVRFVSSAKGKGLFATQLIRKGETIFVERPLVAAQFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 WNALYRYRACDHCLRALEKAEENAQRLTGKPGQVLPHPELCTVRKDLHQNCPHCQVMYCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WNALYRYRACDHCLRALEKAEENAQRLTGKPGQVLPHPELCTVRKDLHQNCPHCQVMYCS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AECRLAATEQYHQVLCPGPSQDDPLHPLNKLQEAWRSIHYPPETASIMLMARMVATVKQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AECRLAATEQYHQVLCPGPSQDDPLHPLNKLQEAWRSIHYPPETASIMLMARMVATVKQA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 KDKDRWIRLFSQFCNKTANEEEEIVHKLLGDKFKGQLELLRRLFTEALYEEAVSQWFTPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KDKDRWIRLFSQFCNKTANEEEEIVHKLLGDKFKGQLELLRRLFTEALYEEAVSQWFTPD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 GFRSLFALVGTNGQGIGTSSLSQWVHACDTLELKPQDREQLDAFIDQLYKDIEAATGEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GFRSLFALVGTNGQGIGTSSLSQWVHACDTLELKPQDREQLDAFIDQLYKDIEAATGEFL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 NCEGSGLFVLQSCCNHSCVPNAETSFPENNFLLHVTALEDIKPGEEICISYLDCCQRERS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NCEGSGLFVLQSCCNHSCVPNAETSFPENNFLLHVTALEDIKPGEEICISYLDCCQRERS
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB0 RHSRHKILRENYLFVCSCPKCLAEADEPNVTSEEEEEEEEEEEGEPEDAELGDEMTDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RHSRHKILRENYLFVCSCPKCLAEADEPNVTSEEEEEEEEEEEGEPEDAELGDEMTDV
              370       380       390       400       410        




418 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:28:37 2016 done: Sat Nov  5 17:28:38 2016
 Total Scan time:  2.980 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]