FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0958, 420 aa
  1>>>pF1KB0958 420 - 420 aa - 420 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4550+/-0.00038; mu= 16.7823+/- 0.024
 mean_var=72.2265+/-14.464, 0's: 0 Z-trim(112.9): 3  B-trim: 706 in 1/50
 Lambda= 0.150913
 statistics sampled from 22045 (22046) to 22045 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.258), width:  16
 Scan time:  8.330

The best scores are:                                      opt bits E(85289)
NP_000937 (OMIM: 176635) DNA primase small subunit ( 420) 2860 632.1 8.1e-181


>>NP_000937 (OMIM: 176635) DNA primase small subunit [Ho  (420 aa)
 initn: 2860 init1: 2860 opt: 2860  Z-score: 3367.3  bits: 632.1 E(85289): 8.1e-181
Smith-Waterman score: 2860; 100.0% identity (100.0% similar) in 420 aa overlap (1-420:1-420)

               10        20        30        40        50        60
pF1KB0 METFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 METFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 DKILALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DKILALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 CFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 STNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKGELLKKSDLQKDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 STNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKGELLKKSDLQKDF
              370       380       390       400       410       420




420 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:08:12 2016 done: Sat Nov  5 08:08:13 2016
 Total Scan time:  8.330 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]