FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0959, 190 aa
  1>>>pF1KB0959 190 - 190 aa - 190 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0447+/-0.000645; mu= 10.3346+/- 0.039
 mean_var=85.3665+/-17.172, 0's: 0 Z-trim(112.9): 6  B-trim: 3 in 1/50
 Lambda= 0.138813
 statistics sampled from 13584 (13589) to 13584 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.417), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS42524.1 C19orf60 gene_id:55049|Hs108|chr19     ( 201)  781 165.2 2.3e-41
CCDS46019.1 C19orf60 gene_id:55049|Hs108|chr19     ( 179)  618 132.6 1.4e-31


>>CCDS42524.1 C19orf60 gene_id:55049|Hs108|chr19          (201 aa)
 initn: 781 init1: 781 opt: 781  Z-score: 856.2  bits: 165.2 E(32554): 2.3e-41
Smith-Waterman score: 781; 100.0% identity (100.0% similar) in 117 aa overlap (74-190:62-178)

            50        60        70        80        90       100   
pF1KB0 RVPLRESGSVLPTYQSSPLVSGDTSWGPFRWLAPVQGLRAWGRGLRVPTCRRGHRQYLRS
                                     ::::::::::::::::::::::::::::::
CCDS42 PWKDAPIRTLVQRIHQLQAERAQGFRRLEEWLAPVQGLRAWGRGLRVPTCRRGHRQYLRS
              40        50        60        70        80        90 

           110       120       130       140       150       160   
pF1KB0 GPDYDFARYRSTVHGVTQAFAAASREVLAVEAELGGPRRQPLLAGHVRSLQELEQTRLGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GPDYDFARYRSTVHGVTQAFAAASREVLAVEAELGGPRRQPLLAGHVRSLQELEQTRLGT
             100       110       120       130       140       150 

           170       180       190                       
pF1KB0 VALLQLMETPELAGQEDAVRMQQLKMK                       
       :::::::::::::::::::::::::::                       
CCDS42 VALLQLMETPELAGQEDAVRMQQLKMKVIKTMEAISEVLQDLRFDAESAE
             160       170       180       190       200 

>>CCDS46019.1 C19orf60 gene_id:55049|Hs108|chr19          (179 aa)
 initn: 612 init1: 612 opt: 618  Z-score: 680.6  bits: 132.6 E(32554): 1.4e-31
Smith-Waterman score: 618; 81.7% identity (90.5% similar) in 126 aa overlap (69-190:33-156)

       40        50        60          70         80         90    
pF1KB0 GVGLSRVPLRESGSVLPTYQSSPLVSGDTSW--GPFRWLAP-VQGLRAW-GRGLRVPTCR
                                     :  .:.: :.  .. :.:  ..:.:    .
CCDS46 TETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFR--RLE
             10        20        30        40        50          60

          100       110       120       130       140       150    
pF1KB0 RGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLAVEAELGGPRRQPLLAGHVRSLQ
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLAVEAELGGPRRQPLLAGHVRSLQ
               70        80        90       100       110       120

          160       170       180       190                       
pF1KB0 ELEQTRLGTVALLQLMETPELAGQEDAVRMQQLKMK                       
       ::::::::::::::::::::::::::::::::::::                       
CCDS46 ELEQTRLGTVALLQLMETPELAGQEDAVRMQQLKMKVIKTMEAISEVLQDLRFDAESAE
              130       140       150       160       170         




190 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:00:25 2016 done: Sat Nov  5 18:00:26 2016
 Total Scan time:  2.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]