FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0961, 193 aa
  1>>>pF1KB0961 193 - 193 aa - 193 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3031+/-0.000886; mu= 4.4686+/- 0.053
 mean_var=156.9519+/-33.985, 0's: 0 Z-trim(111.4): 106  B-trim: 0 in 0/50
 Lambda= 0.102374
 statistics sampled from 12231 (12357) to 12231 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.38), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS1413.1 CSRP1 gene_id:1465|Hs108|chr1           ( 193) 1395 217.1 5.3e-57
CCDS9015.1 CSRP2 gene_id:1466|Hs108|chr12          ( 193) 1159 182.3 1.7e-46
CCDS7848.1 CSRP3 gene_id:8048|Hs108|chr11          ( 194)  968 154.0 5.2e-38


>>CCDS1413.1 CSRP1 gene_id:1465|Hs108|chr1                (193 aa)
 initn: 1395 init1: 1395 opt: 1395  Z-score: 1136.8  bits: 217.1 E(32554): 5.3e-57
Smith-Waterman score: 1395; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB0 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 RCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF
              130       140       150       160       170       180

              190   
pF1KB0 GFGQGAGALVHSE
       :::::::::::::
CCDS14 GFGQGAGALVHSE
              190   

>>CCDS9015.1 CSRP2 gene_id:1466|Hs108|chr12               (193 aa)
 initn: 1496 init1: 1159 opt: 1159  Z-score: 948.4  bits: 182.3 E(32554): 1.7e-46
Smith-Waterman score: 1159; 79.3% identity (91.7% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB0 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS
       :: ::::.:::.: .::: ::::::.: :::. :::::::.:::::::::.: :::::::
CCDS90 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP
       ::::::::::::::::::::. :.:: :::: : .  ::::::::.:::::: ::.:.: 
CCDS90 CYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 RCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGF
       ::...::::::.::::: ::: :::::::::.::::::..:.::::::::::::::::::
CCDS90 RCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGF
              130       140       150       160       170       180

              190   
pF1KB0 GFGQGAGALVHSE
       :.:::::::::..
CCDS90 GYGQGAGALVHAQ
              190   

>>CCDS7848.1 CSRP3 gene_id:8048|Hs108|chr11               (194 aa)
 initn: 970 init1: 536 opt: 968  Z-score: 795.9  bits: 154.0 E(32554): 5.2e-38
Smith-Waterman score: 968; 69.0% identity (86.4% similar) in 184 aa overlap (1-183:1-184)

               10        20        30        40        50        60
pF1KB0 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS
       ::::::: :::.:.:::: :::.::.: ::::.:: ::.:.: :::::::.:  ::::: 
CCDS78 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV
               10        20        30        40        50        60

               70        80        90        100       110         
pF1KB0 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGH-RPTTNPNASKFAQKIGGSERC
       :::..::::: ::::::: :::: :: ::.. ...:   : .:. : :::. :.: ::.:
CCDS78 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKC
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB0 PRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG
       :::...:::::::.:.:: :::.::::: :::.::::...:::::.::: :::::::: :
CCDS78 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTG
              130       140       150       160       170       180

     180       190   
pF1KB0 FGFGQGAGALVHSE
       .:::          
CCDS78 IGFGGLTQQVEKKE
              190    




193 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:29:50 2016 done: Sat Nov  5 17:29:50 2016
 Total Scan time:  1.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]