Result of FASTA (omim) for
pF1KB0962
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0962, 425 aa
1>>>pF1KB0962 425 - 425 aa - 425 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7184+/-0.000424; mu= 13.8143+/- 0.026
mean_var=207.3205+/-43.067, 0's: 0 Z-trim(118.3): 196 B-trim: 1599 in 1/55
Lambda= 0.089074
statistics sampled from 30783 (31113) to 30783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.365), width: 16
Scan time: 8.140
The best scores are: opt bits E(85289)
NP_008959 (OMIM: 609316) E3 ubiquitin-protein liga ( 425) 2852 379.3 1.1e-104
XP_011512566 (OMIM: 609316) PREDICTED: E3 ubiquiti ( 424) 2833 376.8 5.7e-104
XP_011512567 (OMIM: 609316) PREDICTED: E3 ubiquiti ( 421) 2731 363.7 5e-100
XP_011512568 (OMIM: 609316) PREDICTED: E3 ubiquiti ( 261) 1728 234.5 2.4e-61
NP_003440 (OMIM: 600830) tripartite motif-containi ( 539) 637 94.7 5.9e-19
XP_006715243 (OMIM: 600830) PREDICTED: tripartite ( 539) 637 94.7 5.9e-19
XP_005249432 (OMIM: 600830) PREDICTED: tripartite ( 539) 637 94.7 5.9e-19
XP_005249431 (OMIM: 600830) PREDICTED: tripartite ( 539) 637 94.7 5.9e-19
XP_005249435 (OMIM: 600830) PREDICTED: tripartite ( 539) 637 94.7 5.9e-19
XP_005249434 (OMIM: 600830) PREDICTED: tripartite ( 539) 637 94.7 5.9e-19
NP_001229712 (OMIM: 600830) tripartite motif-conta ( 539) 637 94.7 5.9e-19
XP_005249433 (OMIM: 600830) PREDICTED: tripartite ( 539) 637 94.7 5.9e-19
NP_439893 (OMIM: 605701) tripartite motif-containi ( 395) 600 89.8 1.3e-17
NP_006769 (OMIM: 605701) tripartite motif-containi ( 481) 600 89.9 1.5e-17
NP_742013 (OMIM: 605700) E3 ubiquitin-protein liga ( 488) 577 87.0 1.2e-16
NP_006501 (OMIM: 602165) zinc finger protein RFP [ ( 513) 574 86.6 1.6e-16
NP_149083 (OMIM: 608487) tripartite motif-containi ( 347) 558 84.3 5.1e-16
NP_477514 (OMIM: 607564) tripartite motif-containi ( 488) 560 84.8 5.3e-16
NP_001003818 (OMIM: 607564) tripartite motif-conta ( 516) 560 84.8 5.5e-16
XP_016873951 (OMIM: 608487) PREDICTED: tripartite ( 300) 555 83.9 6.2e-16
NP_149084 (OMIM: 608487) tripartite motif-containi ( 326) 555 83.9 6.5e-16
XP_005253241 (OMIM: 608487) PREDICTED: tripartite ( 326) 555 83.9 6.5e-16
NP_149023 (OMIM: 608487) tripartite motif-containi ( 493) 555 84.2 8.3e-16
XP_005253240 (OMIM: 608487) PREDICTED: tripartite ( 493) 555 84.2 8.3e-16
XP_011518728 (OMIM: 608487) PREDICTED: tripartite ( 310) 536 81.4 3.4e-15
XP_016873950 (OMIM: 608487) PREDICTED: tripartite ( 310) 536 81.4 3.4e-15
XP_016873952 (OMIM: 608487) PREDICTED: tripartite ( 265) 532 80.8 4.4e-15
XP_006718421 (OMIM: 608487) PREDICTED: tripartite ( 265) 532 80.8 4.4e-15
XP_011518729 (OMIM: 608487) PREDICTED: tripartite ( 271) 529 80.5 5.9e-15
XP_011512527 (OMIM: 605701) PREDICTED: tripartite ( 413) 531 81.0 6.3e-15
XP_011512524 (OMIM: 605701) PREDICTED: tripartite ( 499) 531 81.1 7.1e-15
XP_011512525 (OMIM: 605701) PREDICTED: tripartite ( 499) 531 81.1 7.1e-15
XP_011512523 (OMIM: 605701) PREDICTED: tripartite ( 499) 531 81.1 7.1e-15
NP_067076 (OMIM: 605700) E3 ubiquitin-protein liga ( 518) 526 80.5 1.1e-14
NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 525 80.3 1.2e-14
XP_016873949 (OMIM: 608487) PREDICTED: tripartite ( 314) 520 79.4 1.4e-14
NP_003132 (OMIM: 109092) E3 ubiquitin-protein liga ( 475) 514 78.9 3.1e-14
XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 501 77.2 9.8e-14
NP_006065 (OMIM: 606559) E3 ubiquitin-protein liga ( 498) 493 76.2 2.1e-13
NP_067629 (OMIM: 605684) tripartite motif-containi ( 488) 487 75.4 3.5e-13
NP_001003827 (OMIM: 605684) tripartite motif-conta ( 488) 487 75.4 3.5e-13
NP_001128327 (OMIM: 606123) E3 ubiquitin-protein l ( 343) 475 73.7 8.3e-13
NP_569074 (OMIM: 605684) tripartite motif-containi ( 270) 472 73.1 9.4e-13
XP_011513161 (OMIM: 600830) PREDICTED: tripartite ( 462) 474 73.7 1.1e-12
XP_016866752 (OMIM: 600830) PREDICTED: tripartite ( 462) 474 73.7 1.1e-12
NP_001186502 (OMIM: 606559) E3 ubiquitin-protein l ( 494) 472 73.5 1.3e-12
XP_011542512 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 477) 471 73.3 1.4e-12
NP_057186 (OMIM: 606123) E3 ubiquitin-protein liga ( 477) 471 73.3 1.4e-12
NP_001020111 (OMIM: 606123) E3 ubiquitin-protein l ( 477) 471 73.3 1.4e-12
XP_011542511 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 477) 471 73.3 1.4e-12
>>NP_008959 (OMIM: 609316) E3 ubiquitin-protein ligase T (425 aa)
initn: 2852 init1: 2852 opt: 2852 Z-score: 2000.8 bits: 379.3 E(85289): 1.1e-104
Smith-Waterman score: 2852; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)
10 20 30 40 50 60
pF1KB0 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 RKNAIRFNSLLRNLVEKIQALQASEVQSKRKEATCPRHQEMFHYFCEDDGKFLCFVCRES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 RKNAIRFNSLLRNLVEKIQALQASEVQSKRKEATCPRHQEMFHYFCEDDGKFLCFVCRES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 KDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQGVHRVDVFTDQVEHEKQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 KDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQGVHRVDVFTDQVEHEKQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 ILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLVDSLKTKQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 ILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLVDSLKTKQN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 MPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQAD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 RKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNHHSSAPSHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 RKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNHHSSAPSHS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LFRASSAGKVTFPVCLLASYDEISGQGASSQDTKTFDVALSEELHAALSEWLTAIRAWFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 LFRASSAGKVTFPVCLLASYDEISGQGASSQDTKTFDVALSEELHAALSEWLTAIRAWFC
370 380 390 400 410 420
pF1KB0 EVPSS
:::::
NP_008 EVPSS
>>XP_011512566 (OMIM: 609316) PREDICTED: E3 ubiquitin-pr (424 aa)
initn: 1728 init1: 1728 opt: 2833 Z-score: 1987.6 bits: 376.8 E(85289): 5.7e-104
Smith-Waterman score: 2833; 99.8% identity (99.8% similar) in 425 aa overlap (1-425:1-424)
10 20 30 40 50 60
pF1KB0 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 RKNAIRFNSLLRNLVEKIQALQASEVQSKRKEATCPRHQEMFHYFCEDDGKFLCFVCRES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKNAIRFNSLLRNLVEKIQALQASEVQSKRKEATCPRHQEMFHYFCEDDGKFLCFVCRES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 KDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQGVHRVDVFTDQVEHEKQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQGVHRVDVFTDQVEHEKQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 ILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLVDSLKTKQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLVDSLKTKQN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 MPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQAD
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPPRQLLEDIKVVLC-SEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQAD
250 260 270 280 290
310 320 330 340 350 360
pF1KB0 RKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNHHSSAPSHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNHHSSAPSHS
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB0 LFRASSAGKVTFPVCLLASYDEISGQGASSQDTKTFDVALSEELHAALSEWLTAIRAWFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFRASSAGKVTFPVCLLASYDEISGQGASSQDTKTFDVALSEELHAALSEWLTAIRAWFC
360 370 380 390 400 410
pF1KB0 EVPSS
:::::
XP_011 EVPSS
420
>>XP_011512567 (OMIM: 609316) PREDICTED: E3 ubiquitin-pr (421 aa)
initn: 2731 init1: 2731 opt: 2731 Z-score: 1916.8 bits: 363.7 E(85289): 5e-100
Smith-Waterman score: 2731; 99.8% identity (99.8% similar) in 410 aa overlap (1-410:1-410)
10 20 30 40 50 60
pF1KB0 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 RKNAIRFNSLLRNLVEKIQALQASEVQSKRKEATCPRHQEMFHYFCEDDGKFLCFVCRES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKNAIRFNSLLRNLVEKIQALQASEVQSKRKEATCPRHQEMFHYFCEDDGKFLCFVCRES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 KDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQGVHRVDVFTDQVEHEKQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQGVHRVDVFTDQVEHEKQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 ILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLVDSLKTKQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLVDSLKTKQN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 MPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQAD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 RKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNHHSSAPSHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNHHSSAPSHS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LFRASSAGKVTFPVCLLASYDEISGQGASSQDTKTFDVALSEELHAALSEWLTAIRAWFC
:::::::::::::::::::::::::::::::::::::::::::::::: :
XP_011 LFRASSAGKVTFPVCLLASYDEISGQGASSQDTKTFDVALSEELHAALMEKGSPCSSPRT
370 380 390 400 410 420
pF1KB0 EVPSS
XP_011 L
>>XP_011512568 (OMIM: 609316) PREDICTED: E3 ubiquitin-pr (261 aa)
initn: 1728 init1: 1728 opt: 1728 Z-score: 1222.4 bits: 234.5 E(85289): 2.4e-61
Smith-Waterman score: 1728; 99.6% identity (99.6% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KB0 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 RKNAIRFNSLLRNLVEKIQALQASEVQSKRKEATCPRHQEMFHYFCEDDGKFLCFVCRES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKNAIRFNSLLRNLVEKIQALQASEVQSKRKEATCPRHQEMFHYFCEDDGKFLCFVCRES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 KDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQGVHRVDVFTDQVEHEKQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQGVHRVDVFTDQVEHEKQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 ILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLVDSLKTKQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLVDSLKTKQN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 MPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQAD
::::::::::::::: :
XP_011 MPPRQLLEDIKVVLCSSTTSS
250 260
>>NP_003440 (OMIM: 600830) tripartite motif-containing p (539 aa)
initn: 596 init1: 360 opt: 637 Z-score: 461.3 bits: 94.7 E(85289): 5.9e-19
Smith-Waterman score: 637; 34.7% identity (65.6% similar) in 308 aa overlap (1-300:1-307)
10 20 30 40 50 60
pF1KB0 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
::.. . .:.::: : :::: :. :::::::: :: .: :.. : . :::::
NP_003 MATSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPF
10 20 30 40 50 60
70 80 90 100 110
pF1KB0 RKNAIRFNSLLRNLVEKIQAL------QASEVQSKRKEAT-CPRHQEMFHYFCEDDGKFL
.:. :: : .:::.:. : : .:: ....: : ::.: .::.::::::.:
NP_003 KKENIRPVWQLASLVENIERLKVDKGRQPGEVTREQQDAKLCERHREKLHYYCEDDGKLL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 CFVCRESKDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQ-VKAQGVHRVDVFTD
: .::::..:. :.. :.:.::: .. .: .....:. .... .: .:.: . .
NP_003 CVMCRESREHRPHTAVLMEKAAQPHREKILNHLSTLR-RDRDKIQGFQAKGEADILAALK
130 140 150 160 170
180 190 200 210 220 230
pF1KB0 QVEHEKQRILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLV
... ..: :..::: :: :.:... :: .. : .: ::. ... . .: : ..
NP_003 KLQDQRQYIVAEFEQGHQFLREREEHLLEQLAKLEQELTEGREKFKSRGVGELARLALVI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 DSLKTKQNMPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKK
. :. : ..: .:..: . : : . .: :. ..:: .: ... :. .:..
NP_003 SELEGKAQQPAAELMQDTRDFLNRYPRKKFWVGKPIARVVKKKTGEFSDKLLSLQRGLRE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 FKDQLQADRKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNH
:. .: :
NP_003 FQGKLLRDLEYKTVSVTLDPQSASGYLQLSEDWKCVTYTSLYKSAYLHPQQFDCEPGVLG
300 310 320 330 340 350
>>XP_006715243 (OMIM: 600830) PREDICTED: tripartite moti (539 aa)
initn: 596 init1: 360 opt: 637 Z-score: 461.3 bits: 94.7 E(85289): 5.9e-19
Smith-Waterman score: 637; 34.7% identity (65.6% similar) in 308 aa overlap (1-300:1-307)
10 20 30 40 50 60
pF1KB0 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
::.. . .:.::: : :::: :. :::::::: :: .: :.. : . :::::
XP_006 MATSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPF
10 20 30 40 50 60
70 80 90 100 110
pF1KB0 RKNAIRFNSLLRNLVEKIQAL------QASEVQSKRKEAT-CPRHQEMFHYFCEDDGKFL
.:. :: : .:::.:. : : .:: ....: : ::.: .::.::::::.:
XP_006 KKENIRPVWQLASLVENIERLKVDKGRQPGEVTREQQDAKLCERHREKLHYYCEDDGKLL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 CFVCRESKDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQ-VKAQGVHRVDVFTD
: .::::..:. :.. :.:.::: .. .: .....:. .... .: .:.: . .
XP_006 CVMCRESREHRPHTAVLMEKAAQPHREKILNHLSTLR-RDRDKIQGFQAKGEADILAALK
130 140 150 160 170
180 190 200 210 220 230
pF1KB0 QVEHEKQRILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLV
... ..: :..::: :: :.:... :: .. : .: ::. ... . .: : ..
XP_006 KLQDQRQYIVAEFEQGHQFLREREEHLLEQLAKLEQELTEGREKFKSRGVGELARLALVI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 DSLKTKQNMPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKK
. :. : ..: .:..: . : : . .: :. ..:: .: ... :. .:..
XP_006 SELEGKAQQPAAELMQDTRDFLNRYPRKKFWVGKPIARVVKKKTGEFSDKLLSLQRGLRE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 FKDQLQADRKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNH
:. .: :
XP_006 FQGKLLRDLEYKTVSVTLDPQSASGYLQLSEDWKCVTYTSLYKSAYLHPQQFDCEPGVLG
300 310 320 330 340 350
>>XP_005249432 (OMIM: 600830) PREDICTED: tripartite moti (539 aa)
initn: 596 init1: 360 opt: 637 Z-score: 461.3 bits: 94.7 E(85289): 5.9e-19
Smith-Waterman score: 637; 34.7% identity (65.6% similar) in 308 aa overlap (1-300:1-307)
10 20 30 40 50 60
pF1KB0 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
::.. . .:.::: : :::: :. :::::::: :: .: :.. : . :::::
XP_005 MATSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPF
10 20 30 40 50 60
70 80 90 100 110
pF1KB0 RKNAIRFNSLLRNLVEKIQAL------QASEVQSKRKEAT-CPRHQEMFHYFCEDDGKFL
.:. :: : .:::.:. : : .:: ....: : ::.: .::.::::::.:
XP_005 KKENIRPVWQLASLVENIERLKVDKGRQPGEVTREQQDAKLCERHREKLHYYCEDDGKLL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 CFVCRESKDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQ-VKAQGVHRVDVFTD
: .::::..:. :.. :.:.::: .. .: .....:. .... .: .:.: . .
XP_005 CVMCRESREHRPHTAVLMEKAAQPHREKILNHLSTLR-RDRDKIQGFQAKGEADILAALK
130 140 150 160 170
180 190 200 210 220 230
pF1KB0 QVEHEKQRILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLV
... ..: :..::: :: :.:... :: .. : .: ::. ... . .: : ..
XP_005 KLQDQRQYIVAEFEQGHQFLREREEHLLEQLAKLEQELTEGREKFKSRGVGELARLALVI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 DSLKTKQNMPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKK
. :. : ..: .:..: . : : . .: :. ..:: .: ... :. .:..
XP_005 SELEGKAQQPAAELMQDTRDFLNRYPRKKFWVGKPIARVVKKKTGEFSDKLLSLQRGLRE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 FKDQLQADRKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNH
:. .: :
XP_005 FQGKLLRDLEYKTVSVTLDPQSASGYLQLSEDWKCVTYTSLYKSAYLHPQQFDCEPGVLG
300 310 320 330 340 350
>>XP_005249431 (OMIM: 600830) PREDICTED: tripartite moti (539 aa)
initn: 596 init1: 360 opt: 637 Z-score: 461.3 bits: 94.7 E(85289): 5.9e-19
Smith-Waterman score: 637; 34.7% identity (65.6% similar) in 308 aa overlap (1-300:1-307)
10 20 30 40 50 60
pF1KB0 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
::.. . .:.::: : :::: :. :::::::: :: .: :.. : . :::::
XP_005 MATSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPF
10 20 30 40 50 60
70 80 90 100 110
pF1KB0 RKNAIRFNSLLRNLVEKIQAL------QASEVQSKRKEAT-CPRHQEMFHYFCEDDGKFL
.:. :: : .:::.:. : : .:: ....: : ::.: .::.::::::.:
XP_005 KKENIRPVWQLASLVENIERLKVDKGRQPGEVTREQQDAKLCERHREKLHYYCEDDGKLL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 CFVCRESKDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQ-VKAQGVHRVDVFTD
: .::::..:. :.. :.:.::: .. .: .....:. .... .: .:.: . .
XP_005 CVMCRESREHRPHTAVLMEKAAQPHREKILNHLSTLR-RDRDKIQGFQAKGEADILAALK
130 140 150 160 170
180 190 200 210 220 230
pF1KB0 QVEHEKQRILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLV
... ..: :..::: :: :.:... :: .. : .: ::. ... . .: : ..
XP_005 KLQDQRQYIVAEFEQGHQFLREREEHLLEQLAKLEQELTEGREKFKSRGVGELARLALVI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 DSLKTKQNMPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKK
. :. : ..: .:..: . : : . .: :. ..:: .: ... :. .:..
XP_005 SELEGKAQQPAAELMQDTRDFLNRYPRKKFWVGKPIARVVKKKTGEFSDKLLSLQRGLRE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 FKDQLQADRKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNH
:. .: :
XP_005 FQGKLLRDLEYKTVSVTLDPQSASGYLQLSEDWKCVTYTSLYKSAYLHPQQFDCEPGVLG
300 310 320 330 340 350
>>XP_005249435 (OMIM: 600830) PREDICTED: tripartite moti (539 aa)
initn: 596 init1: 360 opt: 637 Z-score: 461.3 bits: 94.7 E(85289): 5.9e-19
Smith-Waterman score: 637; 34.7% identity (65.6% similar) in 308 aa overlap (1-300:1-307)
10 20 30 40 50 60
pF1KB0 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
::.. . .:.::: : :::: :. :::::::: :: .: :.. : . :::::
XP_005 MATSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPF
10 20 30 40 50 60
70 80 90 100 110
pF1KB0 RKNAIRFNSLLRNLVEKIQAL------QASEVQSKRKEAT-CPRHQEMFHYFCEDDGKFL
.:. :: : .:::.:. : : .:: ....: : ::.: .::.::::::.:
XP_005 KKENIRPVWQLASLVENIERLKVDKGRQPGEVTREQQDAKLCERHREKLHYYCEDDGKLL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 CFVCRESKDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQ-VKAQGVHRVDVFTD
: .::::..:. :.. :.:.::: .. .: .....:. .... .: .:.: . .
XP_005 CVMCRESREHRPHTAVLMEKAAQPHREKILNHLSTLR-RDRDKIQGFQAKGEADILAALK
130 140 150 160 170
180 190 200 210 220 230
pF1KB0 QVEHEKQRILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLV
... ..: :..::: :: :.:... :: .. : .: ::. ... . .: : ..
XP_005 KLQDQRQYIVAEFEQGHQFLREREEHLLEQLAKLEQELTEGREKFKSRGVGELARLALVI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 DSLKTKQNMPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKK
. :. : ..: .:..: . : : . .: :. ..:: .: ... :. .:..
XP_005 SELEGKAQQPAAELMQDTRDFLNRYPRKKFWVGKPIARVVKKKTGEFSDKLLSLQRGLRE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 FKDQLQADRKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNH
:. .: :
XP_005 FQGKLLRDLEYKTVSVTLDPQSASGYLQLSEDWKCVTYTSLYKSAYLHPQQFDCEPGVLG
300 310 320 330 340 350
>>XP_005249434 (OMIM: 600830) PREDICTED: tripartite moti (539 aa)
initn: 596 init1: 360 opt: 637 Z-score: 461.3 bits: 94.7 E(85289): 5.9e-19
Smith-Waterman score: 637; 34.7% identity (65.6% similar) in 308 aa overlap (1-300:1-307)
10 20 30 40 50 60
pF1KB0 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV
::.. . .:.::: : :::: :. :::::::: :: .: :.. : . :::::
XP_005 MATSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPF
10 20 30 40 50 60
70 80 90 100 110
pF1KB0 RKNAIRFNSLLRNLVEKIQAL------QASEVQSKRKEAT-CPRHQEMFHYFCEDDGKFL
.:. :: : .:::.:. : : .:: ....: : ::.: .::.::::::.:
XP_005 KKENIRPVWQLASLVENIERLKVDKGRQPGEVTREQQDAKLCERHREKLHYYCEDDGKLL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 CFVCRESKDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQ-VKAQGVHRVDVFTD
: .::::..:. :.. :.:.::: .. .: .....:. .... .: .:.: . .
XP_005 CVMCRESREHRPHTAVLMEKAAQPHREKILNHLSTLR-RDRDKIQGFQAKGEADILAALK
130 140 150 160 170
180 190 200 210 220 230
pF1KB0 QVEHEKQRILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLV
... ..: :..::: :: :.:... :: .. : .: ::. ... . .: : ..
XP_005 KLQDQRQYIVAEFEQGHQFLREREEHLLEQLAKLEQELTEGREKFKSRGVGELARLALVI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 DSLKTKQNMPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKK
. :. : ..: .:..: . : : . .: :. ..:: .: ... :. .:..
XP_005 SELEGKAQQPAAELMQDTRDFLNRYPRKKFWVGKPIARVVKKKTGEFSDKLLSLQRGLRE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 FKDQLQADRKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNH
:. .: :
XP_005 FQGKLLRDLEYKTVSVTLDPQSASGYLQLSEDWKCVTYTSLYKSAYLHPQQFDCEPGVLG
300 310 320 330 340 350
425 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:30:30 2016 done: Sat Nov 5 17:30:32 2016
Total Scan time: 8.140 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]