FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0965, 194 aa
  1>>>pF1KB0965 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7356+/-0.000993; mu= 2.3388+/- 0.059
 mean_var=190.1475+/-45.496, 0's: 0 Z-trim(111.4): 94  B-trim: 649 in 1/50
 Lambda= 0.093010
 statistics sampled from 12285 (12382) to 12285 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.38), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS7848.1 CSRP3 gene_id:8048|Hs108|chr11          ( 194) 1403 199.9 8.1e-52
CCDS9015.1 CSRP2 gene_id:1466|Hs108|chr12          ( 193)  977 142.7 1.3e-34
CCDS1413.1 CSRP1 gene_id:1465|Hs108|chr1           ( 193)  968 141.5   3e-34


>>CCDS7848.1 CSRP3 gene_id:8048|Hs108|chr11               (194 aa)
 initn: 1403 init1: 1403 opt: 1403  Z-score: 1043.7  bits: 199.9 E(32554): 8.1e-52
Smith-Waterman score: 1403; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB0 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTG
              130       140       150       160       170       180

              190    
pF1KB0 IGFGGLTQQVEKKE
       ::::::::::::::
CCDS78 IGFGGLTQQVEKKE
              190    

>>CCDS9015.1 CSRP2 gene_id:1466|Hs108|chr12               (193 aa)
 initn: 965 init1: 523 opt: 977  Z-score: 734.8  bits: 142.7 E(32554): 1.3e-34
Smith-Waterman score: 977; 69.0% identity (85.3% similar) in 184 aa overlap (1-184:1-183)

               10        20        30        40        50        60
pF1KB0 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV
       :: :::: ::::: .:::::::.::.:::::. :: ::.::: ::::::: :. ::::: 
CCDS90 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKC
       :::..::::: ::::::: :. : ::.::..  .: .: : .:. : :::. :.: .:::
CCDS90 CYGKKYGPKGYGYGQGAGTLNMDRGERLGIK-PESVQPHRPTTNPNTSKFAQKYGGAEKC
               70        80        90        100       110         

              130       140       150       160       170       180
pF1KB0 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTG
        ::: :::::::..:.::::::.::::: ::::::::..:.:.::.::: :::::::: :
CCDS90 SRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG
     120       130       140       150       160       170         

              190    
pF1KB0 IGFGGLTQQVEKKE
       .:.:          
CCDS90 FGYGQGAGALVHAQ
     180       190   

>>CCDS1413.1 CSRP1 gene_id:1465|Hs108|chr1                (193 aa)
 initn: 970 init1: 536 opt: 968  Z-score: 728.3  bits: 141.5 E(32554): 3e-34
Smith-Waterman score: 968; 69.0% identity (86.4% similar) in 184 aa overlap (1-184:1-183)

               10        20        30        40        50        60
pF1KB0 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV
       ::::::: :::.:.:::: :::.::.: ::::.:: ::.:.: :::::::.:  ::::: 
CCDS14 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKC
       :::..::::: ::::::: :::: :: ::.. ...:   : .:. : :::. :.: ::.:
CCDS14 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGH-RPTTNPNASKFAQKIGGSERC
               70        80        90        100       110         

              130       140       150       160       170       180
pF1KB0 PRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTG
       :::...:::::::.:.:: :::.::::: :::.::::...:::::.::: :::::::: :
CCDS14 PRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKG
     120       130       140       150       160       170         

              190    
pF1KB0 IGFGGLTQQVEKKE
       .:::          
CCDS14 FGFGQGAGALVHSE
     180       190   




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:32:10 2016 done: Sat Nov  5 17:32:10 2016
 Total Scan time:  1.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]